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Record W7019879001

Human «ether-a-go-go» related gene trafficking is dependent on a cytosolic chaperone network

2010· dissertation· en· W7019879001 on OpenAlexafffund

Bibliographic record

VenueeScholarship@McGill (McGill) · 2010
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGlutathione Transferases and Polymorphisms
Canadian institutionsMcGill University
FundersCanadian Institutes of Health Research
KeywordsChaperone (clinical)GeneCytosolGene expressionTransfectionEndocytosis
DOInot available

Abstract

fetched live from OpenAlex

Long QT Syndrome is a cardiac disorder associated with ventricular arrhythmias that can lead to syncope and sudden death.Loss of function mutations in the human ether-a-go-go related gene (hERG/KCNH2) potassium channel underlie type 2 long-QT syndrome (LQT2).Most often this loss of function is a consequence of defective trafficking of hERG mutants to the cell surface, with channel retention and degradation at the endoplasmic reticulum.This study began with a proteomics screen conducted to search for hERGinteracting proteins that were important for its folding, trafficking, and degradation.The resulting list of putative interactors was huge and included several known components of the cytosolic chaperone network which became the focus of this work.Among them were Hsc70 (70 kDa heat shock cognate protein), Hsp90 (90 kDa heat shock protein), DJA1, Hop (Hsp-organizing protein) and Bag-2 (BCL-associated athanogene 2) as well as the membrane-bound FKBP38 (38 kDa FK506-binding protein; FKBP8).We first demonstrate that FKBP38 immunoprecipitates and co-localizes with hERG in our cellular system and that siRNA knockdown of FKBP38 causes a reduction in hERG trafficking.Next, we identify DJA1 (DNAJA1) and DJA2 (DNAJA2) as key modulators of hERG degradation.Overexpression of the DJAs reduces hERG trafficking List of Abbreviations AC adenylyl cyclase Aha1 activator of Hsp90 ATPase 1 aLQTS acquired long QT syndrome AR adrenergic receptor Bag-2 BCL-associated athanogene 2 CaM calmodulin cAMP cyclic adenosine monophosphate CF cystic fibrosis CFTR cystic fibrosis transmembrane conductance regulator CG core glycosylated CHIP C-terminal of Hsp70 interacting protein CL C-linker CNBD cyclic nucleotide binding domain CT carboxyl terminus DAG diacyl glycerol EAG ether-a-go-go gene ECG electrocardiogram EDEM ER degradation-enhancing mannosidase-like protein ER endoplasmic reticulum ERAD ER associated degradation FG fully glycosylated FKBP38 38 kDa FK506-binding protein GA geldanamycin GRP glucose-regulated protein GFP green fluorescent protein GT glucosyltransferase HA hemagglutinin hERG human ether-a-go-go-related gene HCN2 Hyperpolarization activated cyclic nucleotide-gated potassium channel 2 Hop Hsp-organizing protein Hsc70 70 kDa heat shock cognate protein Hsp90 90 kDa heat shock protein ICD implantable cardiac defibrillator IP3 1,4,5 inositol triphosphate J-LN Jervell and Lange-Nielson syndrome XIV LCSD left cardiac sympathetic nerve denervation LQTS long QT syndrome MiRP1 minK-related peptide 1 MSD membrane spanning domain NBD nucleotide binding domain PAS Per-Arnt-Sim PIP2 phosphatidyl-4,5-bisphosphate PKA protein kinase A PKC protein kinase C PPI peptidylprolyl cis/trans isomerase QC quality control RRL rabbit reticulocyte lysate RW Romano-Ward syndrome SCD sudden cardiac death SHR steroid hormone receptor TCC tetramerizing coiled coil TPR tetratricopeptide repeat UBL ubiquitin-like domain WT wild type XV

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.242
Teacher spread0.230 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2010
Admission routes2
Has abstractyes

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