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Record W7033666151

Sacsin deletion disrupts Golgi organization and Autophagy in C6 rat glioblastoma cells

2022· dissertation· en· W7033666151 on OpenAlexaboutno aff

Bibliographic record

VenueUniversidade Nova de Lisboa's Repository (Universidade Nova de Lisboa) · 2022
Typedissertation
Languageen
FieldEnvironmental Science
TopicAvian ecology and behavior
Canadian institutionsnot available
Fundersnot available
KeywordsAutophagyUnfolded protein responseProtein aggregationParkinAutophagy-related protein 13Cell cultureEndoplasmic reticulumVacuolar protein sorting
DOInot available

Abstract

fetched live from OpenAlex

Autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS) is a rare childhood-onset ataxia characterized by progressive cerebellar ataxia, spasticity, motor sensory neuropathy and axonal demyelination. ARSACS is caused by mutations in the SACS gene, which leads to the production of defective forms of the 520 kDa multidomain protein sacsin. C6 rat glioblastoma cells were targeted for sacsin deletion by means of CRISPR/Cas9 technique to generate an astroglial model of ARSACS. Sacsin knockout cell lines were isolated by Flow Cytometry-assisted Cell Sorting and sacsin loss was subsequently confirmed in further experiments. Intermediate filaments (IF) expression levels were analyzed upon serum starvation and incubation with IL-6 and BMP2 cytokines, while IF aggregation and their disruption on organelle organization was observed by immunocytochemistry. C6 SACS-/- cells revealed an increase in expression of IF proteins and aggregation of nestin in the juxtanuclear area. Golgi apparatus was often pushed out of the perinuclear area and disarrayed in SACS-/- cells. STAT3 and SMAD1/5 signalling was altered in C6 SACS-/- cells in response to cytokines. The expression of the alarmin protein S100B was significantly higher in C6 SACS-/- cells. The expression of the cytosolic form of the autophagy protein LC3-I was identical in both cells lines but the levels of the activated LC3-II form was reduced in C6 SACS-/- cells, indicating alterations in the autophagy flux. ER stress pathways were also analyzed for possible novel phenotypes in ARSACS cells. The expression of the Unfolded Protein Response (UPR)-related protein Bip did not differ for both C6 strains. CHOP had an increased expression in reference C6 cells in normal conditions but was unexpectedly not expressed in conditions of serum starvation. Withaferin A (WFA), a drug known to bind and disorganize the type III IF vimentin, disrupted Nestin filaments and induced Golgi dispersion similar to C6 SACS-/- cells. In conclusion, lack of sacsin protein disrupts glial intermediate filament assembly and intracellular organelle distribution, enhances S100B expression and impairs autophagy, while being inconclusive regarding ER stress. These results suggest a potential function for sacsin in glial cells and may have implications for treating ARSACS as well as a variety of human illnesses caused by the disruption of intermediate filament networks.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity, Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.518
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0000.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0100.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.216
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

Explore more

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