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Record W7045233164

Adult genetic leukoencephalopathies: identifying new entities using advanced MRI techniques, next generation sequencing and clinical profiling

2019· dissertation· en· W7045233164 on OpenAlexfundno aff

Bibliographic record

VenueeScholarship@McGill (McGill) · 2019
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA regulation and disease
Canadian institutionsnot available
FundersFonds de Recherche du Québec - SantéBundesministerium für Bildung und ForschungZonMwOntario Genomics InstituteCanadian Institutes of Health ResearchMcGill University Health CentreGenome CanadaOntario GenomicsChildren's Hospital FoundationAmerican Society of NeuroradiologyMcGill University
KeywordsWhite matterExome sequencingLeukoencephalopathyGenetic testingPhenotypeNeuroimagingGenetic heterogeneityMagnetic resonance imaging
DOInot available

Abstract

fetched live from OpenAlex

Genetic leukoencephalopathies are considered rare in the adult population. However, several lines of evidence suggest that there is a larger than expected number of adult patients with genetic leukoencephalopathies who are currently not diagnosed. The study of leukoencephalopathies - either genetically-proven or unsolved - relies greatly on MRI pattern-recognition, which allowed the characterization of the majority of genetic white matter disorders. The advent of next generation sequencing (NGS) revolutionized the field, by disclosing new phenotypes associated to known genetic white matter conditions and identifying novel genes responsible for unsolved leukoencephalopathies. The goals of my study were1.the application of advanced neuroimaging tools to define and characterize white matter abnormalities of known and novel genetic leukoencephalopathies2.the clinical and demographic characterization of subjects with adult genetic leukoencephalopathies3.the identification of genes responsible for new forms of hereditary white matter disorders, using NGS techniques.We applied an integrated approach which combined clinical phenotyping with MRI pattern-recognition and NGS data. This work led to a) the description of a cohort of 68 adult subjects with leukoencephalopathy of probable genetic origin, 59 of which were included in our study, b) the identification of the causal mutations (16 in total, 11 novel) in genes known to be associated with leukoencephalopathies in 14/59 subjects (23.7%), and c) the broadening of clinical and imaging phenotypes of known disorders: POLR3-related disorders, vanishing white matter disease, Krabbe disease, MTFMT-related disorders. We demonstrated that MRI family studies can be crucial in adult leukoencephalopathies to define the modality of transmission of unclear white matter disorders within families. In conclusion, we documented that adult genetic leukoencephalopathies are an emerging problem in clinical neurosciences. MRI family studies and the recognition of disease-specific MRI features are critical to guide the diagnostic process. Despite the access to NGS techniques, more than 70% of our subjects remain without a diagnosis. The international sharing of MRI and NGS on adult leukoencephalopathies will allow the identification of subjects with same phenotypes or mutated genes and ultimately lead to the description of new genetic entities.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.080
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.048
GPT teacher head0.308
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

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