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Record W7061477670

PmrAB-regulated LPS phosphoethanolamine modifications have multiple roles in «Citrobacter rodentium»

2015· dissertation· en· W7061477670 on OpenAlexfundno aff

Bibliographic record

VenueeScholarship@McGill (McGill) · 2015
Typedissertation
Languageen
FieldPhysics and Astronomy
TopicAdaptive optics and wavefront sensing
Canadian institutionsnot available
FundersCanadian Institutes of Health ResearchNatural Sciences and Engineering Research Council of CanadaMcGill University
KeywordsImmune systemEnzymeIdentification (biology)Context (archaeology)
DOInot available

Abstract

fetched live from OpenAlex

Gram-negative bacteria have the ability to modify their lipopolysaccharide (LPS) in response to changing environmental conditions.The principal regulator of LPS modifications in the Enterobacteriaceae is the PmrA-PmrB (PmrAB) two-component system, which is activated by micromolar concentrations of Fe 3+ and Al 3+ and mildly acidic pH.PmrAB mediates the transcription of pmrC and cptA, encoding phosphoethanolamine (pEtN) transferases that catalyze the addition of pEtN to the 1-and 4'-phosphoryl groups of the lipid A moiety and to the phosphoryl group of heptose-I of the core moiety of LPS, respectively.The first objective was to determine if PmrC-and CptA-mediated pEtN modifications play a role in maintaining outer membrane integrity in C. rodentium under PmrAB-inducing conditions.To assess the role of pEtN modifications in outer membrane integrity, C. rodentium ∆pmrAB, ∆pmrC, ∆cptA and ∆pmrC∆cptA strains were generated.The ∆pmrC, ∆pmrC∆cptA and ∆pmrAB demonstrated increased susceptibility to hydrophobic antibiotics, whereas only the ∆pmrC∆cptA and ∆pmrAB strains displayed a loss of OM integrity under PmrAB-inducing conditions.The second objective was to determine the mechanism by which PmrC-and CptA-mediated pEtN modifications maintain outer membrane integrity under PmrAB-inducing conditions.Whole-cell lysate LPS extractions performed on ∆waaL strains grown in the presence of micromolar concentrations of iron demonstrated that the ∆waaL∆pmrC∆cptA strain accumulates free lipid A, which is a measure of a defect in LPS turnover.Using sucrose density gradient centrifugation, it was shown that the ∆waaL∆pmrC∆cptA strain accumulated LPS throughout its cell envelope in the presence of micromolar iron, whereas the ∆waaL strain had most of its LPS in the fractions corresponding to the outer membrane, suggesting that pEtN modifications are involved in the transfer of LPS from the IM to the OM.The third objective was to determine whether the response to iron results in the formation of OM vesicles (OMVs).It was determined that OM vesiculation does occur in the ix CONTRIBUTIONS TO ORIGINAL SCIENTIFIC KNOWLEDGE 1.We show that PmrC and CptA maintain OM integrity in C. rodentium.2. We demonstrate that PmrC and CptA confer resistance to hydrophobic antibiotics.3. We show that PmrC and CptA promote lipid A turnover.4. We demonstrate that lack of PmrC and CptA results in free lipid A accumulation in the presence of iron.5. We demonstrate that PmrC and CptA promote transfer of LPS to the OM. 6.We show that iron increases Gram-negative bacterial resistance to hydrophobic antibiotics in a concentration-dependent manner.7. We demonstrate that iron promotes OM vesiculation.8.We show that PmrC and CptA confer protection against OMVs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.248
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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