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Record W7066764790

Investigating a novel CTRP8-DLK1 interaction and its impact on glioma stemness

2023· dissertation· en· W7066764790 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueMspace (University of Manitoba) · 2023
Typedissertation
Languageen
FieldComputer Science
TopicComputational Physics and Python Applications
Canadian institutionsUniversity of Manitoba
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health Research
KeywordsGliomaCell cultureRegulatorStem cellFunction (biology)GlioblastomaSignal transductionTranscription factor
DOInot available

Abstract

fetched live from OpenAlex

Background: The C1Q-tumor necrosis factor related protein (CTRP) family has functions in metabolism, immunity, and cancer. Among the CTRP family, CTRP8 remains the least well characterized in terms of function and receptors. In the brain tumor glioblastoma (GBM), CTRP8 impacts migration and treatment resistance through its receptor RXFP1. We investigate a new interaction between CTRP8 and the EGF-like protein Delta-like homolog 1 (DLK1). DLK1 is a well-known regulator of differentiation and is considered a marker of stemness in several cancers. In GBM, elevated DLK1 expression promotes migration, stemness and has been correlated with poor prognosis. There is interest in further understanding complex mechanisms of DLK1 in a cancer context. Methodology: A yeast-two hybrid (Y2H) screen and co-immunoprecipitation (co-IP) were used to characterize CTRP8-DLK1 interaction domains. The U251 cell line was used to assess stemness using tumor sphere formation and glioma stem cell (GSC) marker expression. In the same U251 model we investigate mechanisms responsive to CTRP8-DLK1 that regulate GSCs. Results: The Y2H identified DLK1 as a CTRP8 interaction partner. In co-IP CTRP8 binds full-size DLK1 and a truncated, soluble form of DLK1. DLK1 enhanced sphere formation and GSC marker expression in U251. The pro-stemness effect of DLK1 was counteracted by CTRP8, resulting in an overall reduction in stemness. Reduced stemness in cells expressing a cleavage-resistant DLK1 form revealed potential functions of DLK1 cleavage products as factors regulating the GSC population. In U251 cells expressing DLK1, CTRP8 treatment increased DLK1 intracellular domain (ICD) release and nuclear translocation. DLK1 ICD may act as a transcriptional co-factor revealing a new function for DLK1 ICD. Conclusions: This is the first study describing CTRP8 as a DLK1 ligand. Our findings reveal DLK1 as a promoter of glioma stemness, and CTRP8 as an antagonist. The CTRP8-DLK1 interaction may be part of a novel regulatory system impacting the glioma stem cell niche that can be of clinical relevance.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.744
Threshold uncertainty score0.922

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.270
Teacher spread0.241 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it