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Record W7070278752

Outlier detection methods for meta-analyses of site-specific effect estimates from a multi-site network

2023· dissertation· en· W7070278752 on OpenAlexafffundabout

Bibliographic record

VenueMspace (University of Manitoba) · 2023
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMachine Learning in Bioinformatics
Canadian institutionsUniversity of Manitoba
FundersCanadian Institutes of Health Research
KeywordsOutlierResidualVariance (accounting)Studentized residualAnomaly detectionStandard deviationEstimationPairwise comparison
DOInot available

Abstract

fetched live from OpenAlex

Introduction: Data privacy legislation in Canada prohibits patient-level administrative health data from crossing jurisdictional boundaries. Accordingly, multi-site research networks often conduct distributed analyses and pool site-specific effect estimates (EEs) using meta-analysis models. Rare outcomes and heterogeneity in site-specific EEs can produce potential outliers that may bias pooled EEs. Limited research has compared outlier detection methods and the impact of potential outliers on meta-analysis results. Purpose and Objectives: The research purpose was to examine outlier detection methods for meta-analyses of site-specific EEs from a multi-site network. The objectives were to: 1) compare outlier detection methods for random-effects meta-analysis (REM) models, and 2) apply these methods to site-specific EEs from systematically selected real-world meta-analyses. Methods: We compared studentized residual estimates (StdR), relative change in pooled EE variance (RCPEV), relative change in estimated between-site variance (RCEBV), and model-based mean-shift method (MMS) using computer simulation. EEs were simulated assuming a normal distribution. Accuracy, misclassification error (ME), and F-1 score were assessed using random-effects analysis of variance models. We systematically selected meta-analyses conducted by investigators from the Canadian Network for Observational Drug Effect Studies (CNODES), applied outlier detection methods, and assessed the impact of potential outliers on REM results. Results: StdR had the highest accuracy (median: 89.9%) and lowest ME (median: 10.2%). RCPEV was the most consistent in all metrics. For StdR, the number of sites explained 95.1% and 93.0% of the variation in accuracy and ME values. For RCEBV and MMS, between-site variance described the most variation in accuracy and ME values. StdR and RCPEV were most sensitive to detect potential outliers in re-analyses of 39 published CNODES meta-analyses. Heterogeneity in site-specific EEs was reduced to zero in two-thirds of the meta-analyses when potential outliers were removed, and the precision of pooled EEs increased. Conclusions: StdR and RCPEV outperformed RCEBV and MMS in outlier detection. The number of sites and between-site variance explained the most variation in performance metrics for all methods. Excluding potential outliers from published meta-analyses, substantially reduced heterogeneity in site-specific EEs and increased the precision of pooled EEs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.611
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.052
GPT teacher head0.340
Teacher spread0.288 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes3
Has abstractyes

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