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Record W7095773429

Supplemental Experimental Procedures Mutant Mouse Generation

2015· article· en· W7095773429 on OpenAlexaboutno aff

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAnimal Genetics and Reproduction
Canadian institutionsnot available
Fundersnot available
KeywordsHomologous recombinationgenomic DNAMutagenesisGenomic libraryGeneBacterial artificial chromosomeDNASouthern blotMutantGene targeting
DOInot available

Abstract

fetched live from OpenAlex

Genomic DNA clones used in the construction of all 3 mouse lines were isolated from the 129/Svj mouse genomic DNA BAC library (Invitrogen). Genomic DNA fragments of interest were subcloned in pBluescript and targeting vectors were constructed based on information from mouse genomic DNA databases. PICK1 KO and GluR2∆7 KI mice were generated as previously detailed (Gardner et al., 2005). GluR2 K882A KI mice were generated using a strategy very similar to that for GluR2∆7 KI mice. Targeting vectors were constructed with thymidine kinase genes for negative selection and neomycin resistance cassettes for positive selection. Mutagenesis was performed in pBluescript using the QuikChange method (Stratagene) and verified by sequence analysis. Linearized targeting vectors were electroporated into R1 embryonic stem (ES) cells (Dr. A. Nagy, Mount Sinai Hospital, Toronto, Canada) and homologous recombinants were isolated by positive and negative selection with G418 and gancyclovir, respectively. ES cell clones were screened by PCR designed to detect only homologous recombination events (Gardner et al., 2005). After Southern blot confirmation, ES cell clones were injected into C57BL/6 blastocyts to obtain chimeras at

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.014
Threshold uncertainty score0.272

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.283
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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