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Record W7114789073 · doi:10.1021/acs.oprd.5c00346

Fully Liquid Phase Oligonucleotide Synthesis

2025· article· en· W7114789073 on OpenAlexaff

Bibliographic record

VenueOrganic Process Research & Development · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA and Nucleic Acid Chemistry
Canadian institutionsVictoria Park
FundersInnovate UKNovartis PharmaAlnylam PharmaceuticalsAstraZeneca
KeywordsOligonucleotideReagentCleavage (geology)MembranePhase (matter)Oligonucleotide synthesisLiquid phaseSolid-phase synthesis

Abstract

fetched live from OpenAlex

Representative oligonucleotides (oligos), a 21-mer siRNA strand and a 16-mer ASO-like gapmer, were synthesized by Nanostar Sieving, a membrane-assisted liquid phase oligo synthesis (LPOS) method, at a 10 mmol scale and 20 mM concentration in a single solvent. This process is the first total LPOS beyond 10-mer, i.e., the reagents and intermediates remain in the liquid phase from the very first reaction to isolation. At all times during the synthesis of the full-length product, the concentration of oligos within the Nanostar-10 reactor remained roughly constant. Both sequences were synthesized four times, twice using membrane sheets clamped flat in circular cells and twice using scalable spiral wound modules. Cleavage and deprotection continued to maintain the oligo in the liquid phase until the final lyophilization, when yields were calculated from the optical density, adjusting for chromatographic and mass spectral purity. Synthetic process mass intensities approaching those of solid phase oligo synthesis (SPOS) were achieved.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.015
Threshold uncertainty score0.050

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0150.011

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.354
Teacher spread0.337 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2025
Admission routes1
Has abstractyes

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