The Influence of Variation in Hexanucleotide Repeat Number in the 5’ Untranslated Region of Cytochrome C Oxidase Subunit 7A1 on the Development of Cognitive Impairment
Bibliographic record
Abstract
BACKGROUND: Cognitive decline is a feature seen with aging and is accelerated in Alzheimer's disease (AD). Mitochondrial dysfunction is also a feature of both aging and AD. A previous study identified a common hexanucleotide (AGCCCC) variant in the 5' untranslated (5' UTR) region of the Cytochrome C Oxidase Subunit 7A1 (COX7A1) gene through Sanger sequencing in a region of the genome not amenable to short read sequencing. The 5' UTR is upstream of the promoter and is known to impact translational regulation in vitro. In order to assess if this variation has an impact on cognition in vivo in humans, a cross-section of older individuals at risk for decline was sequenced. METHOD: Nuclear DNA samples were obtained from a cross-sectional cohort (N = 296) of individuals aged 65-85 from the National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD). Quantitative polymerase chain reaction (qPCR) was performed on the 5' UTR of COX7A1. Sanger sequencing was performed on a subset of samples to confirm variant length. Fragment analysis was performed on all samples and analyzed in GeneMapper to categorize the number of UTR repeats on each chromosome. Cognitive (MoCA z-score) and demographic (sex, age, education, and APOE status) data were obtained from corresponding participants from the National Alzheimer's Coordinating Center (NACC). Analysis of variance (ANOVA) was performed. APOE e2 carriers were excluded from analysis. The dependent variable was the Montreal Cognitive Assessment z-score (MoCA z-score) and independent variables were APOE status (APOE e4 carrier vs non-carrier) and dichotomized COX7A1 UTR hexanucleotide repeat number (high repeat number and low repeat number). RESULT: Both APOE carrier status and COX7A1 UTR hexanucleotide repeat number were found to result in a statistically significant difference in MoCA z-score. CONCLUSION: In a small cross-sectional cohort (N = 296) aged 65-85 increased hexanucleotide repeat number in the 5' UTR of COX7A1 appears to negatively impact global cognition (MoCA z-score). Larger, prospective follow-up studies paired with neurodegenerative biomarkers will need to be performed to assess if this association is secondary to aging, AD neuropathological change, or other associated pathology.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.004 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.001 | 0.000 |
| Insufficient payload (model declined to judge) | 0.002 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".