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Record W7117369926 · doi:10.1016/j.ijid.2025.108348

Evidence on mpox clade Ia and clade Ib: A rapid research needs appraisal

2025· article· en· W7117369926 on OpenAlexfundno aff
Dijana Spasenoska, Naemi Araya, Marieke de Swart, Nicholas Henschke, Eli P Harriss, Greta Tam, Amen Patrick-Nwosu, Marakiya T. Moetlediwa, Musawenkosi Ndlovu, Yonela Ntamo, Katrin Probyn, Salome Steinke, Lauren Ashley, Vincent Chi‐Chung Cheng, Gemma Villanueva, Tamsyn Harris, Duduzile Ndwandwe, Lance Turtle, Serena Carville, Alice Norton

Bibliographic record

VenueInternational Journal of Infectious Diseases · 2025
Typearticle
Languageen
FieldImmunology and Microbiology
TopicPoxvirus research and outbreaks
Canadian institutionsnot available
FundersEuropean CommissionNational Institute for Health Research Health Protection Research UnitNational Institute for Health and Care ResearchGovernment of the United KingdomInternational Development Research CentreEuropean and Developing Countries Clinical Trials PartnershipWellcome Trust
KeywordsCladeCritical appraisalPublic healthBaseline (sea)Basic research

Abstract

fetched live from OpenAlex

OBJECTIVES: The emergence of a new mpox sub-clade Ib and changes in transmission pattern are of concern. To inform strategies to protect populations and improve outcomes, we implemented a rapid research needs appraisal (RRNA) to identify existing evidence on mpox clade I. METHODS: We searched Embase, MEDLINE, Scopus, and grey literature to 11 February 2025 for human mpox clade I studies. RESULTS: Of 79 studies identified, 2.5% (2/79) were interventional, 97.4% (77/79) observational, presenting data on 59,183 mpox cases. Most (57/79) focused on clade Ia, 16/79 clade Ib, and 6/79 unspecified sub-clade I. 90.8% were set in Africa. Studies focused on clinical characteristics (n = 55), transmission (n = 23), risk factors for disease/severe disease (n = 13), diagnostics (n = 9), social/behavioural factors (n = 6), immune response/seroprevalence (n = 5), and vaccine/treatments (n = 4). Symptoms and complications were similar for both sub-clades. Three studies reported foetal death in 8/12-8/14 pregnant women infected with clade Ib and in 3/4 of women with clade Ia. The pooled case fatality rate (CFR) was 6% (95% CI 3% to 8%) in clade Ia studies and 1% (95% CI 0% to 1%) in clade Ib studies. There were no studies on effectiveness of prevention, treatment, risk of asymptomatic infection, or immune protection over time. CONCLUSION: The identified evidence-gaps provide a baseline to inform coordinated research strategies to generate evidence for clinical and public health responses to improve outcomes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.163
metaresearch head score (Gemma)0.355
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.163
Threshold uncertainty score0.862

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1630.355
Meta-epidemiology (narrow)0.0030.003
Meta-epidemiology (broad)0.0110.016
Bibliometrics0.0420.021
Science and technology studies0.0020.004
Scholarly communication0.0130.016
Open science0.0060.009
Research integrity0.0090.006
Insufficient payload (model declined to judge)0.0110.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.402
Teacher spread0.365 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes1
Has abstractyes

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