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Record W7132946293

Posttranscriptional regulation of maternal transcripts by the PAN GU kinase in the early Drosophila embryo

2007· dissertation· W7132946293 on OpenAlexfundno aff
Wael Tadros

Bibliographic record

VenueTSpace · 2007
Typedissertation
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicDevelopmental Biology and Gene Regulation
Canadian institutionsnot available
FundersMedical Research CouncilMedical Research Council Canada
KeywordsEmbryoPsychological repressionRegulation of gene expressionGeneTranslation (biology)Protein kinase AEmbryonic stem cellTranscription (linguistics)MutantTranslational regulation
DOInot available

Abstract

fetched live from OpenAlex

Early embryonic development is controlled by maternally deposited proteins and transcripts. Egg activation triggers a cascade of posttranscriptional mechanisms that are crucial to the regulation of these maternal mRNAs during this time of transcriptional quiescence. These mechanisms include translational activation, repression and transcript destabilization. Here I show that, in Drosophila, the PAN GU (PNG) kinase complex sits near the top of this cascade that ultimately leads to the destabilization of maternal mRNAs. The genes png, plutonium (plu) and giant nuclei (gnu), which encode the components of this complex, were recovered in a screen for maternal effect lethal mutants which fail to undergo degradation. I show that png's control of transcript destabilization is genetically separable and therefore independent of its well characterized role in the cell cycle. PNG acts following egg activation in promoting the translation of SMAUG (SMG), a major posttranscriptional regulator. Our gene-expression profiling experiments show that SMG is responsible for targeting two thirds of degrading maternal mRNAs. PNG activates smg translation in a poly(A)-independent manner acting through the smg 3'UTR. Finally, I show that PNG also has a SMG-independent mechanism of eliciting transcript decay.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.589
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.295
Teacher spread0.283 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2007
Admission routes1
Has abstractyes

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