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Record W7132974842

Shared Genetics in IgA Nephropathy and Enteropathies

2024· dissertation· en· W7132974842 on OpenAlexaff
Salli Lahtinen

Bibliographic record

VenueTrepo - Institutional Repository of Tampere University · 2024
Typedissertation
Languageen
FieldMedicine
TopicRenal Diseases and Glomerulopathies
Canadian institutionsInstitute of Genetics
Fundersnot available
KeywordsNephropathyDiseaseGlomerulonephritisImmunopathologySecretory IgAPathogenesisImmunoglobulin A
DOInot available

Abstract

fetched live from OpenAlex

IgA nephropathy (IgAN) is the world's most common primary glomerulonephritis and a significant cause of end-stage kidney disease (ESKD).In IgAN immune complexes containing immunoglobulin A (IgA) are deposited into the glomerular mesangium, causing glomerular inflammation.A characteristic presentation of IgAN is transient gross hematuria occurring during mucosal infections.As IgA is the most abundantly produced immunoglobulin in humans and especially on mucosal surfaces, mucosal immunity has been considered to be involved in the pathogenesis of IgAN.Research considering the role of the gastrointestinal mucosa in IgAN started in the 1980s and evidence has since been accumulating on the specific factors between kidneys and intestine.IgAN has also been reported to occur more often in patients with celiac disease (CeD) and inflammatory bowel disease (IBD), compared to patients who do not suffer from diseases of intestine, enteropathies.These findings further support the theory of the presence of a gut-kidney axis.However, many factors on this topic remain unclear.According to the present literature, IgAN and enteropathies have shared genetics.The aim of this thesis is to give a detailed review of what is currently known of the shared genetics of CeD and IBD with IgAN based on current research.In this thesis, first, the characteristics of IgAN, CeD and IBD are reviewed generally.The gut-kidney axis in IgAN, as well as methods used in genetic studies are then introduced.The last section of this thesis focuses on the shared risk genetics of CeD and IBD with IgAN.Currently, there is no solid evidence of specific genetic factors connecting IgAN and CeD.However, genome-wide association studies (GWAS) have discovered susceptibility genes for IgAN that are directly or indirectly related to the risk of IBD too.Among them are genes associated with the IgA in the gut, intestinal epithelial barrier integrity, and response to mucosal pathogens.Other genetic studies have also shown that immune-mediated pathways have a key role both in the pathogenesis of IgAN and that of IBD.However further research is needed to elucidate the true possibility of shared pathogenesis between these complex diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.525
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.230
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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