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Record W7132989181

Localization of Heat Shock Proteins HSPA6 (HSP70B') and HSPA1A (HSP70-1) in Cultured Differentiated Human Neuronal Cells Following Thermal Stress

2014· dissertation· W7132989181 on OpenAlexfundno aff
Sam Khalouei

Bibliographic record

VenueTSpace · 2014
Typedissertation
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicHeat shock proteins research
Canadian institutionsnot available
FundersUniversity of Toronto ScarboroughNatural Sciences and Engineering Research Council of Canada
KeywordsNucleolusRNAHeat shock proteinCytoplasmRNA-binding proteinStress granuleNuclear localization sequenceCell nucleusNuclear proteinHeat shock
DOInot available

Abstract

fetched live from OpenAlex

Heat shock proteins (Hsps) are a set of highly conserved proteins that are involved in cellular repair and protective mechanisms. In order to identify stress-sensitive sites in differentiated human neuronal cells, cytoplasmic and nuclear localization of two inducible members of the HSPA (HSP70) family was investigated, namely HSPA6 (HSP70B') and HSPA1A (HSP70-1). Stably transfected SH-SY5Y neuronal cell lines were generated that express YFP-HSPA6 and YFP-HSPA1A proteins. Following differentiation, transfected SH-SY5Y cells were exposed to mild heat shock at 43째C for 20 min. Immediately following heat shock, YFP-tagged HSPA6 and HSPA1A proteins localized to centrioles in the cytoplasm and nuclear speckles that are enriched in RNA splicing factors. Subsequently, both stress proteins associated with the granular component of the nucleolus which is the site of ribosomal subunit assembly and ribosomal RNA processing. Later in the recovery period, YFP-HSPA6 protein, but not YFP-HSPA1A, localized to the periphery of nuclear speckles that are sites of RNA transcription and RNA splicing. The present results identify centrioles, nuclear speckles, and the GC component of the nucleolus as potential stress-sensitive sites in differentiated human neuronal cells. The inducible HSPA6 and HSPA1A proteins exhibit similar localization to these sites. The unique association of the HSPA6 protein with the periphery of nuclear speckles identifies this nuclear site as being stress sensitive, and suggests that the little studied HSPA6 protein may be involved in the recovery of RNA transcription and/or splicing. HSPA6 is a strictly inducible protein, whose gene is present in the human genome but not in rat and mouse. Hence current animal models of neurodegenerative diseases are lacking a potentially protective member of the HSPA family. Sequence and structural analysis revealed that HSPA6 has three additional cysteine amino acids compared to HSPA1A. One of these cysteine amino acids, located in the linker domain, is not found in any other member of the human HSPA family. Identification of stress-sensitive sites in differentiated human neuronal cells could aid the design of therapeutic approaches to protect neurons from the progression of neurodegenerative diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.340
Teacher spread0.323 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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