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Record W7133038255

Validation of a Novel Optogenetic Drug Screening Platform for the Discovery of Neuroactive Compounds

2022· dissertation· W7133038255 on OpenAlexaff
Isabelle Tate

Bibliographic record

VenueTSpace · 2022
Typedissertation
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicZebrafish Biomedical Research Applications
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsOptogeneticsDrug discoveryGlutamatergicZebrafishGABAergicDrugExcitatory postsynaptic potentialNervous system
DOInot available

Abstract

fetched live from OpenAlex

Zebrafish provide a powerful system for behavior-based drug discovery aimed at treating disorders of the nervous system. However, current approaches cannot target screening for the identification of drugs that alter specific neuronal cell-types. The incorporation of optogenetics, a technique for the modulation of neural activity using light, with drug screening has the potential to provide targeted screening. Here, we present research aimed at validating this novel screening approach using transgenic zebrafish that express the excitatory optogenetic protein channelrhodopsin-2 in glutamatergic or GABAergic neurons. Using a collection of compounds with known central nervous system targets, we found that optogenetics can enable targeted screening, but in unpredicted ways. We also discovered that optogenetics can amplify the effects of drugs, providing an advantage when screening for new compounds. Our results support further investigation of this drug screening strategy using more compounds with known targets as well as transgenic lines for the optogenetic stimulation of additional cell-types.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.035
GPT teacher head0.371
Teacher spread0.336 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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