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Record W7133043706

In vitro characterization of the acute promyelocytic leukemia variant fusion oncoprotein NuMA-RARalpha

2007· dissertation· W7133043706 on OpenAlexaff
Soheila A. Hamadanizadeh

Bibliographic record

VenueTSpace · 2007
Typedissertation
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicRetinoids in leukemia and cellular processes
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsAcute promyelocytic leukemiaFusion proteinRetinoic acidPsychological repressionFusion geneTranscription factorTranscriptional regulationTranscription (linguistics)Gene
DOInot available

Abstract

fetched live from OpenAlex

Acute promyelocytic leukemia (APL) is characterized by the presence of gene rearrangements involving the retinoic acid receptor a (RARalpha) gene locus on chromosome 17. These rearrangements result in the formation of X-RARalpha fusion oncoproteins which act as aberrant transcriptional repressors, thus making APL a model disease in which to study the role of aberrant transcriptional repression in tumongenesis. Our group identified two variant X-RARalpha---NPM-RARalpha and NuMA-RARalpha---during the last decade. Here, we characterize these variant fusion proteins, in comparison with PML-RARa and PLZF-RARalpha, in terms of their DNA binding properties and ability to repress transcription from the retinoic acid and peroxisome proliferator response elements. Our data suggest a role for X-RARalpha in inhibiting signaling through the PPARgamma/PPRE pathway, consistent with recent evidence for the deregulation of pathways external to retinoid signaling during APL pathogenesis. Our data also indicate that X-RARalpha fusions may fall into two distinct classes in their ability to bind to the RARE and PPRE and to activate ligand-responsive genes. Furthermore, we show that NuMA-RARalpha is capable of causing ligand-dependent transcriptional super-activation at both RAREs and PPREs, exhibiting a property that is unique among the X-RARalpha fusion proteins. We went on to develop the U937/NuMA-RARalpha stable cell line, the first cell culture system expressing this fusion. We report that NuMA-RARalpha was stably expressed at the protein level, and found in both the cytoplasm and nucleus. Furthermore, NuMA-RARalpha did not appear to interfere with localization of NuMA to the mitotic spindle. We found that the PPARgamma ligand troglitazone (TZ) can inhibit the cellular proliferation of cells expressing NuMA-RARa by induction of apoptosis. We validated these findings in an ex vivo system, by demonstrating induction of apoptosis in hCG-NuMA-RARa transgenic mouse LTMCs in response to TZ. Apoptosis in these cells is due to activation of both receptor-mediated and mitochondrial pathways, operating through caspases-8 and -9. This effect of troglitazone was not limited to NuMA-RARalpha, and was not species or cell type specific, thus implicating it as a possible alternative therapy in APL.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.023
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.291
Teacher spread0.285 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2007
Admission routes1
Has abstractyes

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