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Record W7133087222

Identification of a novel anti-inflammatory compound that acts via the Nrf2 pathway

2024· dissertation· W7133087222 on OpenAlexafffund
Elyse Latreille

Bibliographic record

VenueTSpace · 2024
Typedissertation
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics, phytochemicals, and oxidative stress
Canadian institutionsUniversity of Toronto
FundersCanadian Institutes of Health Research
KeywordsARDSInflammationInnate immune systemImmune systemLungPulmonary edemaIn vitroHyperoxiaAntibioticsInfluenza A virus
DOInot available

Abstract

fetched live from OpenAlex

Excessive inflammation contributes to tissue injury in numerous acute illnesses including acute respiratory distress syndrome (ARDS) and ischemia-reperfusion after trauma. Although ARDS is commonly initiated by infection with a viral or bacterial pathogen, treatment with antiviral drugs or antibiotics is often insufficient to improve mortality. This has been attributed to excessive endothelial and innate immune cell activation during infection, resulting in excessive recruitment of leukocytes, overproduction of pro-inflammatory cytokines and the development of lung and systemic endothelial leakage and multi-organ dysfunction. This suggests that treating these patients with compounds that moderate the aberrant host response could improve outcomes. It has previously been shown that the human influenza virus can productively infect larval zebrafish, resulting in edema and death. We performed a phenotypic screen of chemical libraries using flu-infected zebrafish and identified a promising compound, Aeroplysinin-1 (Ap). Ap was able to reduce edema and improve survival of influenza-infected zebrafish; it also improved oxygen saturation in mice infected with a lethal dose of influenza. Ap had no antiviral activity, suggesting it acts to improve the host response. Ap was also evaluated in mouse models of bacterial pneumonia and endotoxin-induced lung injury, where it improved oxygen saturation. It also reduced liver damage in a model of ischemia-reperfusion-induced liver injury. In vitro work indicated that Ap reduces endothelial and leukocyte activation. Pathway analysis revealed induction of the Nrf2 antioxidant pathway by Ap. We confirmed that Ap rapidly induced the loss of Keap1, the natural repressor of Nrf2, which increases Nrf2 levels and Nrf2 antioxidant and anti-inflammatory target genes such as HO-1. Knockdown of Keap1 and Nrf2 by siRNA greatly reduced the effects of the drug. Ap was unable to improve oxygen saturation in Nrf2 KO mice and had no effect in leukocytes isolated from Nrf2 KO mice. We created and screened novel derivates of Ap and identified Aeroplysinin-9 (Ap9) a functional derivative of Ap, able to induce the Nrf2 pathway, improve oxygen saturation during bacterial pneumonia, and reduce injury during ischemia reperfusion injury. This compound or its derivatives may be useful for the treatment of a broad range of inflammatory conditions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.297
Teacher spread0.279 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

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