MétaCan
Menu
Back to cohort
Record W7143722395 · doi:10.15083/0002011989

Reproducibility of Community-driven Data Analysis in Bioinformatics

2023· dissertation· en· W7143722395 on OpenAlexfundno aff
裕貴 末竹

Bibliographic record

VenueInstitutional Repositories DataBase (IRDB) · 2023
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBioinformatics and Genomic Networks
Canadian institutionsnot available
FundersNational Bioscience Database CenterCore Research for Evolutional Science and TechnologyInstitute of GeneticsRIKENJapan Science and Technology AgencyJapan Society for the Promotion of Science
KeywordsReproducibilityField (mathematics)Data analysisPattern recognition (psychology)

Abstract

fetched live from OpenAlex

OpenAlex records an abstract for this work, but it could not be fetched just now.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.321
metaresearch head score (Gemma)0.707
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.679
Threshold uncertainty score0.837

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.3210.707
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0040.006
Bibliometrics0.0120.012
Science and technology studies0.0060.010
Scholarly communication0.0140.016
Open science0.0070.013
Research integrity0.0050.007
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.311
Teacher spread0.275 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designSimulation or modeling
DomainReproducibility
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

Explore more

Same venueInstitutional Repositories DataBase (IRDB)Same topicBioinformatics and Genomic NetworksFrench-language works237,207