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Record W7160087120 · doi:10.5281/zenodo.20022110

PACTAMYCIN: A COMPREHENSIVE REVIEW OF ITS BIOLOGICAL ACTIVITY, BIOSYNTHESIS, AND SYNTHETIC STRATEGIES IN THE FIGHT AGAINST ANTIBIOTIC RESISTANCE

2025· article· en· W7160087120 on OpenAlexaff
Ghassan Shannan, Prof. (Dr.) Zeina S. Malek, Prof. (Dr.) Nasser Thallaj

Bibliographic record

VenueZenodo (CERN European Organization for Nuclear Research) · 2025
Typearticle
Languageen
FieldChemistry
TopicSynthesis and Catalytic Reactions
Canadian institutionsPrivy Council Office
Fundersnot available
KeywordsNatural productAntibiotic resistanceSynthetic biologyAntimycobacterialMetabolic engineeringAntibiotics

Abstract

fetched live from OpenAlex

Pactamycin, an aminocyclopentitol antibiotic, has garnered significant attention due to its dual efficacy as an antimicrobial and antitumor agent. Initially isolated from Streptomyces pactum var. pactum during the "Golden Age" of antibiotics in the 1960s, pactamycin exhibits potent activity against both Gram-positive and Gram-negative bacteria, positioning it as a promising candidate in the fight against antibiotic resistance. Its complex structure, characterized by a cyclopentane core with multiple stereogenic centers and a triamino motif, poses challenges for synthetic chemists aiming to produce this compound and its analogues. Recent advances in understanding the biosynthesis of pactamycin have revealed that it is assembled from three distinct cyclic fragments derived from glucose and acetic acid through independent metabolic pathways. This has provided insights for engineering new derivatives with enhanced biological properties. Structure-activity relationship (SAR) studies have identified critical features influencing biological activity, leading to derivatives with improved selectivity and reduced cytotoxicity. The emergence of nitrene chemistry has facilitated innovative synthetic methodologies, allowing for the efficient generation of pactamycin analogues through controlled C-H amination and aziridination reactions. This article explores the biological structures and activities of pactamycin, its biosynthetic pathways, mechanisms of action, and recent synthetic advancements. By synthesizing knowledge from various disciplines, we aim to provide a comprehensive overview of pactamycin's significance in contemporary medicinal chemistry and its potential role in addressing urgent health challenges, including antibiotic resistance and cancer treatment. As researchers continue to explore the therapeutic potential of pactamycin, its study exemplifies the vital intersection of natural product chemistry and synthetic innovation in the quest for new drugs.Original Article: https://www.researchgate.net/publication/390695757_PACTAMYCIN_A_COMPREHENSIVE_REVIEW_OF_ITS_BIOLOGICAL_ACTIVITY_BIOSYNTHESIS_AND_SYNTHETIC_STRATEGIES_IN_THE_FIGHT_AGAINST_ANTIBIOTIC_RESISTANCE/link/67f925fddf0e3f544f40b65d/download?_tp=eyJjb250ZXh0Ijp7ImZpcnN0UGFnZSI6InB1YmxpY2F0aW9uIiwicGFnZSI6InB1YmxpY2F0aW9uIn19This version is archived in the Arab International University (AIU) repository for open access and dissemination purposes. The content of this paper has not been modified from the original publication.For more information, please visit the official repository of Arab International University (AIU):https://aiu.edu.sy

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.879
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.040
GPT teacher head0.271
Teacher spread0.231 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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