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Functional characterisation of a novel homozygous p.Y227C ADA2 variant in a child with deficiency of adenosine deaminase type 2

2025· article· en· W7162124282 on OpenAlexaff
Ying Hong, Sven Dijkhuis, Charalampia Papadopoulou, Ebun Omoyinmi, Alice Burleigh, Paul Brogan, Despina Eleftheriou

Bibliographic record

VenueClinical and Experimental Rheumatology · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdenosine and Purinergic Signaling
Canadian institutionsInstitute of Infection and Immunity
Fundersnot available
KeywordsAdenosine deaminaseAdenosine deaminase deficiencyAMP deaminaseImmunopathologyGenotypeHeterozygote advantageMutation

Abstract

fetched live from OpenAlex

OBJECTIVES: Deficiency of adenosine deaminase 2 (DADA2) is a rare inflammatory disorder caused by biallelic loss-of-function mutations in ADA2. We sought to functionally characterise a novel homozygous ADA2 variant, p.Y227C (c.680A>G), identified in a six-year-old patient presenting with recurrent fevers, erythema nodosum, and tumor necrosis factor (TNF) inhibitor-responsive myositisMETHODS: Monocyte-derived macrophages from the patient were analysed for ADA2 protein expression, enzymatic activity, and TNFα secretion. To model the inflammatory phenotype in vitro, THP-1 cells were engineered to express the p.Y227C variant. Lentiviral gene correction with wild-type ADA2 was performed to assess rescue of enzymatic function and inflammatory responses. RESULTS: Patient-derived macrophages exhibited markedly reduced ADA2 protein levels and enzymatic activity, accompanied by increased TNFα secretion. THP-1 cells expressing the p.Y227C variant recapitulated this proinflammatory phenotype. Lentiviral reconstitution with wild-type ADA2 restored protein expression and enzymatic activity and normalised TNFα release. CONCLUSIONS: The p.Y227C ADA2 variant is pathogenic and promotes inflammation through loss of ADA2 function. Functional rescue following gene correction confirms the causal role of this mutation and underscores the therapeutic potential of restoring ADA2 activity in DADA2.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.120
Threshold uncertainty score0.307

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.296
Teacher spread0.279 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2025
Admission routes1
Has abstractyes

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