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Recycling of The Kidney Anion Exchanger 1 Is Regulated by Adaptor Protein Complex 1B

2015· article· en· W764096115 on OpenAlexaff
Emmanuelle Cordat, Ensaf Y. Almomani, Martin Jung, Richard Zimmermann, R. Todd Alexander

Bibliographic record

VenueThe FASEB Journal · 2015
Typearticle
Languageen
FieldMedicine
TopicChronic Kidney Disease and Diabetes
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsBiologySignal transducing adaptor proteinMutantCell biologyBiochemistryPhosphorylationGene

Abstract

fetched live from OpenAlex

Adaptor protein complexes 1 (AP‐1) regulate polarized trafficking of membrane proteins. Here, we investigated the role of AP‐1B in regulating the kidney anion exchanger 1 (kAE1) intracellular trafficking. kAE1 physically interacts with AP‐1B in Madin‐Darby canine kidney cells. We hypothesized that AP‐1B regulates the recycling of endocytosed kAE1 protein and that kAE1 mutants that cause distal renal tubular acidosis, fail to properly interact with AP‐1B. We studied kAE1 WT and a dRTA mutant, kAE1 R901X, which lacks the last 11 amino acids encompassing the potential canonical binding site for AP‐1B. We confirmed the physical interaction between kAE1 and heterologously expressed μ1B subunit of AP‐1B in LLC‐PK1 renal epithelial cells lacking endogenous AP‐1B. A peptide spot assay identified multiple interaction sites of AP‐1B in the kAE1 protein sequence, including residues within the second and sixth cytosolic loops, and the C‐terminus. μ1B heterologous expression decreased the amount of plasma membrane kAE1. Although kAE1 R901X mutant underwent endocytosis slightly faster than kAE1 WT, its recycling rate was decreased compared to kAE1 WT, and was independent from μ1B expression. We also observed that (i) μ1B expression disrupts the interaction of GAPDH with kAE1 WT consistent with both proteins binding to an overlapping site on kAE1, and (ii) phosphorylation of tyrosine 904 within the carboxyl‐terminal interaction motif does not affect the kAE1/AP‐1B interaction. We propose that the apically mis‐targeted kAE1 R901X mutant fails to recycle back to the basolateral membrane due to its inability to properly interact with AP‐1B.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.275
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2015
Admission routes1
Has abstractyes

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