MétaCan
Menu
← Back to cohort
Record W850168373 · doi:10.1096/fasebj.20.5.a1115-b

Modeling Ca <sup>2+</sup> oscillations in vascular smooth muscle cells

2006· article· en· W850168373 on OpenAlexaff
Cornelis van Breemen, Nicola Fameli, Kuo‐Hsing Kuo

Bibliographic record

VenueThe FASEB Journal · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicReceptor Mechanisms and Signaling
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsSERCABiophysicsVascular smooth muscleEndoplasmic reticulumChemistryCalciumCytosolOscillation (cell signaling)Coupling (piping)Smooth muscleMaterials scienceBiologyBiochemistryATPaseEndocrinology

Abstract

fetched live from OpenAlex

Recurrent asynchronous Ca2+ waves in smooth muscle of large blood vessels involve a cycle of events starting with Ca2+ release through IP3R and concluding with refilling of the SR by coupling of reverse NCX to SERCA. We present a stochastic numerical model simulating the refilling of the SR through the junctional spaces between the plasma membrane (PM) and the sarcoplasmic reticulum (SR) of vascular smooth muscle cells. The model simulates the diffusional motion of Ca2+ through the junctional cytosol between the PM and the SR as a three-dimensional random walk from ion sources to ion sinks, representing the Na+/Ca2+ exchange carriers and SERCA pumps, respectively. The ultra-structural parameters of the junctional space are taken from serial sections of the vascular smooth muscle analyzed by electron microscopy. The boundary values for the expected Ca2+ flux through each junction per oscillation are calculated from published data relating Ca2+ movements and binding to force development. Results of the mathematical simulation corroborate the idea that Ca2+ uptake via PM-SR junctions can be sufficiently rapid and efficient to constitute a viable pathway for refilling SR calcium to maintain the Ca2+ oscillations supporting vasoconstriction induced by α-adrenergic stimulation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.015
Threshold uncertainty score0.029

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.213
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes1
Has abstractyes

Explore more

Same venueThe FASEB Journal→Same topicReceptor Mechanisms and Signaling→French-language works237,207→