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Abstract 8682: Microarray and Proteomic Analysis of Cardioprotection in the Mature and Aged Male and Female: Role of the Mitochondrion and Mitochondrial Pathways

2011· article· en· W940652921 on OpenAlexaff
Kendra M Black, Reanne Barnett, Manoj Bhasin, Christian Daly, Simon J Dillon, Towia A. Libermann, Akihiro Masuzawa, Sidney Levitsky, James D. McCully

Bibliographic record

VenueCirculation · 2011
Typearticle
Languageen
FieldMedicine
TopicAdipose Tissue and Metabolism
Canadian institutionsDillon Consulting
Fundersnot available
KeywordsCardioprotectionMedicineMitochondrionMicroarrayMicroarray analysis techniquesProteomicsBioinformaticsCell biologyComputational biologyInternal medicineGeneticsGeneBiologyIschemiaGene expression

Abstract

fetched live from OpenAlex

Background: Recently we have shown that cardioprotection afforded by cardioplegia is modulated by RNA and protein dependent mechanisms and is significantly decreased with age and in particular is significantly decreased in the aged female, however, the pathways associated with these differences were unknown. Methods: Mature male and female (15 to 20 weeks; n=6 each) and aged male and female (>32 months; n=6 each) New Zealand White rabbits were used for in situ blood perfused cardiopulmonary bypass (CPB). Control hearts received 30 min sham global ischemia (GI) and 120 min sham reperfusion. GI hearts received 30 min GI, achieved by crossclamping of the aorta. Cardioplegia hearts received cold blood cardioplegia prior to GI. Following 30 min GI the crossclamp was released and the hearts were reperfused for 120 min. RNA and proteins were isolated and microarray and proteomic analysis was performed on matched samples. Results: Microarray analysis showed that cardioplegia up-regulated genes for transcription and the mitochondrion in mature male and female hearts and cytoskeleton dependent intracellular transport and cell-substrate function in aged male and female hearts. Proteomic analysis identified 362 proteins of which 132 were common to all groups. Principal component analysis indicated differential protein expression in each treatment in the mature male and female and aged male, but in the aged female there was no difference in the proteins expressed during GI and cardioplegia. Cardioplegia up-regulated glycolytic and gluconeogenic pathways in the mature and aged male and oxidative phosphorylation, the electron transport chain, propanoate and pyruvate metabolism and the induction of apoptosis in the mature and aged female. The tricarboxylic acid cycle was uniquely up-regulated by cardioplegia in the aged female but not glycolysis or gluconeogenesis. Conclusions: These data demonstrate that the mitochondrion and mitochondrial pathways play a key role in age and gender specific cardioprotection. The identification of these specific pathways will allow for the development of age and gender specific cardioprotection which should significantly decrease morbidity and mortality in the aged female undergoing open heart surgery.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.226
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2011
Admission routes1
Has abstractyes

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