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Regulation of scleraxis‐mediated cardiac fibrotic gene expression by serine phosphorylation

2015· article· en· W954856404 on OpenAlexaff
Ryan Wang, Rushita A. Bagchi, Michael P. Czubryt

Bibliographic record

VenueThe FASEB Journal · 2015
Typearticle
Languageen
FieldMedicine
TopicCardiac Fibrosis and Remodeling
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsTranscription factorChromatin immunoprecipitationPhosphorylationCardiac fibrosisBiologyCell biologyCasein kinase 2MyofibroblastMolecular biologyGene expressionPromoterFibrosisGeneProtein kinase ABiochemistryMedicineCyclin-dependent kinase 2Internal medicine

Abstract

fetched live from OpenAlex

Cardiac fibrosis is a major clinical problem that affects millions of people worldwide yet lacks any specific therapy. Our laboratory was the first to demonstrate the bHLH transcription factor scleraxis induces collagen Iα2 expression in cardiac fibroblasts and myofibroblasts. Scleraxis was also found to be up‐regulated in the heart post‐myocardial infarction, suggesting its role in cardiac pathogenesis. Here we identify a novel mechanism by which scleraxis activity is regulated and determine its effect on genes targeted by scleraxis. Putative phosphorylation sites on scleraxis were revealed by in silico analysis using motif prediction software. Mutation of this phosphorylatable motif to a non‐phosphorylatable form significantly attenuated the expression of fibrillar type I collagen and myofibroblast marker genes normally induced by scleraxis. Down‐regulation of collagen Iα2 expression was due to reduced binding of the non‐phosphorylated scleraxis mutant to specific DNA‐binding sites (E‐boxes) within the promoter as determined by chromatin immunoprecipitation in human cardiac fibroblast cells and electrophoretic mobility shift assay. This is the first evidence suggesting that scleraxis is likely phosphorylated under basal conditions. Analysis of the phosphorylation motif suggested the possible regulation of scleraxis activity by casein kinase 2 (CK2). Inhibition of CK2 activity disrupted the ability of scleraxis to modulate the expression of its target genes. This presents a novel mechanism for regulation of scleraxis activity and thereby provides a rationale for targeting scleraxis for development of drugs to treat cardiac fibrosis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.258

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.249
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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