γ-Secretase Is a Functional Component of Phagosomes
Bibliographic record
Abstract
γ-Secretase is a high molecular mass protein complex that catalyzes the intramembrane cleavage of its protein substrates. Two proteins involved in phagocytosis, CD44 and the low density lipoprotein receptor-related protein, are γ-secretase substrates, suggesting that this complex might regulate some aspects of phagocytosis. Our results indicate that the four components of γ-secretase, viz. presenilin, nicastrin, APH-1, and PEN-2, are present and enriched on phagosome membranes from both murine macrophages and Drosophila S2 phagocytes. The γ-secretase components form high molecular mass complexes in lipid microdomains of the phagosome membrane with the topology expected for the functional enzyme. In contrast to the majority of the phagosome proteins studied so far, which appear to associate transiently with this organelle, γ-secretase resides on newly formed phagosomes and remains associated throughout their maturation into phagolysosomes. Finally, our results indicate that interferon-γ stimulates γ-secretase-dependent cleavages on phagosomes and that γ-secretase activity may be involved in the phagocytic response of macrophages to inflammatory cytokines. γ-Secretase is a high molecular mass protein complex that catalyzes the intramembrane cleavage of its protein substrates. Two proteins involved in phagocytosis, CD44 and the low density lipoprotein receptor-related protein, are γ-secretase substrates, suggesting that this complex might regulate some aspects of phagocytosis. Our results indicate that the four components of γ-secretase, viz. presenilin, nicastrin, APH-1, and PEN-2, are present and enriched on phagosome membranes from both murine macrophages and Drosophila S2 phagocytes. The γ-secretase components form high molecular mass complexes in lipid microdomains of the phagosome membrane with the topology expected for the functional enzyme. In contrast to the majority of the phagosome proteins studied so far, which appear to associate transiently with this organelle, γ-secretase resides on newly formed phagosomes and remains associated throughout their maturation into phagolysosomes. Finally, our results indicate that interferon-γ stimulates γ-secretase-dependent cleavages on phagosomes and that γ-secretase activity may be involved in the phagocytic response of macrophages to inflammatory cytokines. γ-Secretase catalyzes the cleavage of selected type I transmembrane protein substrates within their membrane-spanning domains, an atypical hydrolytic event considering that it occurs in the hydrophobic conditions of the lipid bilayer (1Xia W. Wolfe M.S. J. Cell Sci. 2003; 116: 2839-2844Crossref PubMed Scopus (78) Google Scholar). This type of intramembrane proteolysis was discovered as an essential step in the release of β-amyloid peptides from the amyloid precursor protein (APP), 3The abbreviations used are:APPamyloid precursor proteinLRPlow density lipoprotein receptor-related proteinPSpresenilinNTFN-terminal fragmentCTFC-terminal fragmentpAbspolyclonal antibodiesIFN-γinterferon-γTNF-αtumor necrosis factor-αDAPTN-(N-(3,5-difluorophenacetyl-l-alanyl))-S-phenylglycine t-butyl esterPBSphosphate-buffered salineCHAPS3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic acidBNBlue nativeTricineN-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycineCHAPSO3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxy-1-propanesulfonic acid 3The abbreviations used are:APPamyloid precursor proteinLRPlow density lipoprotein receptor-related proteinPSpresenilinNTFN-terminal fragmentCTFC-terminal fragmentpAbspolyclonal antibodiesIFN-γinterferon-γTNF-αtumor necrosis factor-αDAPTN-(N-(3,5-difluorophenacetyl-l-alanyl))-S-phenylglycine t-butyl esterPBSphosphate-buffered salineCHAPS3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic acidBNBlue nativeTricineN-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycineCHAPSO3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxy-1-propanesulfonic acid a pivotal process in the development of Alzheimer disease pathology (2Selkoe D. Kopan R. Ann. Rev. Neurosci. 2003; 26: 565-597Crossref PubMed Scopus (560) Google Scholar). γ-Secretase activity was later found to function in Notch signaling by releasing the Notch intracellular domain, which translocates to the nucleus and activates the transcription of target genes (2Selkoe D. Kopan R. Ann. Rev. Neurosci. 2003; 26: 565-597Crossref PubMed Scopus (560) Google Scholar). Several other γ-secretase substrates, including CD44, Notch ligands, and the low density lipoprotein receptor-related protein (LRP; also known as CD91), have been identified, and all share a common type I transmembrane protein topology (3Koo E.H. Kopan R. Nat. Med. 2004; 10: S26-S33Crossref PubMed Scopus (151) Google Scholar). γ-Secretase cleavage of these substrates is preceded by proteolysis within their extracellular domains (3Koo E.H. Kopan R. Nat. Med. 2004; 10: S26-S33Crossref PubMed Scopus (151) Google Scholar). Although the biological function of γ-secretase cleavage remains to be deciphered for many substrates, recent evidence indicates that the role of γ-secretase in signal transduction may not be limited to the Notch pathway. Other γ-secretase substrates, including APP, CD44, and LRP, have indeed been shown to generate transcriptionally active C-terminal fragments (4Cao X. Südhof T.C. J. Biol. Chem. 2004; 279: 24609-24611Google Scholar, 5Lammich S. Okochi M. Takeda M. Kaether C. Capell A. Zimmer A.K. Edbauer D. Walter J. Steiner H. Haass C. J. Biol. Chem. 2002; 277: 44754-44759Abstract Full Text Full Text PDF PubMed Scopus (259) Google Scholar, 6May P. Reddy Y.K. Herz J. J. Biol. Chem. 2002; 277: 18736-18743Abstract Full Text Full Text PDF PubMed Scopus (260) Google Scholar). Conversely, cleavage by γ-secretase terminates intracellular signaling mediated by the netrin receptor DCC (deleted in colorectal cancer) (7Parent A.T. Barnes N.Y. Taniguchi Y. Thinakaran G. Sisodia S.S. J. Neurosci. 2005; 25: 1540-1549Crossref PubMed Scopus (58) Google Scholar). Taken together, these studies suggest that γ-secretase-mediated cleavage may be generally involved in cell signaling. amyloid precursor protein low density lipoprotein receptor-related protein presenilin N-terminal fragment C-terminal fragment polyclonal antibodies interferon-γ tumor necrosis factor-α N-(N-(3,5-difluorophenacetyl-l-alanyl))-S-phenylglycine t-butyl ester phosphate-buffered saline 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic acid Blue native N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine 3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxy-1-propanesulfonic acid amyloid precursor protein low density lipoprotein receptor-related protein presenilin N-terminal fragment C-terminal fragment polyclonal antibodies interferon-γ tumor necrosis factor-α N-(N-(3,5-difluorophenacetyl-l-alanyl))-S-phenylglycine t-butyl ester phosphate-buffered saline 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonic acid Blue native N-[2-hydroxy-1,1-bis(hydroxymethyl)ethyl]glycine 3-[(3-cholamidopropyl)dimethylammonio]-2-hydroxy-1-propanesulfonic acid Significant research efforts have recently been invested in characterizing the biochemistry of γ-secretase. Cumulative evidence indicates that γ-secretase consists of a high molecular mass complex composed of at least four different proteins, viz. presenilin (PS)-1 or the less abundant homolog PS2, nicastrin, APH-1, and PEN-2, all of which are integral membrane proteins (8Iwatsubo T. Curr. Opin. Neurobiol. 2004; 14: 379-383Crossref PubMed Scopus (152) Google Scholar). Current models propose that PS1 contains the catalytic site of γ-secretase, an unusual aspartyl protease with two aspartates located in transmembrane domains 6 and 7 of PS1, respectively (9Wolfe M.S. Xia W. Ostaszewski B.L. Diehl T.S. Kimberly W.T. Selkoe D.J. Nature. 1999; 398: 513-517Crossref PubMed Scopus (1685) Google Scholar). Nicastrin and APH-1 are suggested to function in stabilizing and trafficking full-length PS1 through the secretory pathway (10LaVoie M.J. Fraering P.C. Ostaszewski B.L. Ye W. Kimberly W.T. Wolfe M.S. Selkoe D.J. J. Biol. Chem. 2003; 278: 37213-37222Abstract Full Text Full Text PDF PubMed Scopus (191) Google Scholar). PS1 undergoes endoproteolysis in its cytoplasmic loop, located between transmembrane domains 6 and 7, generating the N-terminal (NTF) and C-terminal (CTF) fragments, which remain associated in the complex (11Thinakaran G. Borchelt D.R. Lee M.K. Slunt H.H. Spitzer L. Kim G. Rotovitsky T. Davenport F. Nordstedt C. Seeger M. Hardy J. Levey A.I. Gandy S.E. Jenkins N.A. Copeland N.G. Price D.L. Sisodia S.S. Neuron. 1996; 17: 181-190Abstract Full Text Full Text PDF PubMed Scopus (939) Google Scholar, 12Capell A. Grunberg J. Pesold B. Diehlmann A. Citron M. Nixon R. Beyreuther K. Selkoe D.J. Haass C. J. Biol. Chem. 1998; 273: 3205-3211Abstract Full Text Full Text PDF PubMed Scopus (298) Google Scholar). PEN-2 apparently promotes this cleavage event, a key step in the activation of γ-secretase (13Takasugi N. Tomita T. Hayashi I. Tsuruoka M. Niimura M. Takahashi Y. Thinakaran G. Iwatsubo T. Nature. 2003; 422: 438-441Crossref PubMed Scopus (783) Google Scholar). Several reports have demonstrated that the coexpression of all four proteins is required to produce functional γ-secretase (13Takasugi N. Tomita T. Hayashi I. Tsuruoka M. Niimura M. Takahashi Y. Thinakaran G. Iwatsubo T. Nature. 2003; 422: 438-441Crossref PubMed Scopus (783) Google Scholar, 14Kimberly W.T. LaVoie M.J. Ostaszewski B.L. Ye W. Wolfe M.S. Selkoe D.J. Proc. Natl. Acad. Sci. U. S. A. 2003; 100: 6382-6387Crossref PubMed Scopus (676) Google Scholar, 15Edbauer D. Winkler E. Regula J.T. Pesold B. Steiner H. Haass C. Nat. Cell Biol. 2003; 5: 486-488Crossref PubMed Scopus (775) Google Scholar, 16Hu Y. Fortini M.E. J. Cell Biol. 2003; PubMed Scopus Google Scholar, T. C. Sisodia S.S. J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar). Although the of a functional γ-secretase complex in the Sisodia S.S. J. Biol. Chem. 2004; 279: Full Text Full Text PDF PubMed Scopus Google γ-secretase its substrates in of the secretory pathway and in of the pathway M. S. D.J. J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar, N. E. F. P. A. A. C. J. Cell Biol. 2004; PubMed Scopus Google Scholar). remains γ-secretase cleavage at the that the of Notch recently been as a for its by γ-secretase N. E. F. P. A. A. C. J. Cell Biol. 2004; PubMed Scopus Google Scholar). is a process used by a of from to to the of or A. Rev. 2002; PubMed Scopus Google Scholar). formed phagosomes in a maturation process that with of and with The of in as macrophages the of in the phagosome protein which are at the cell to and are in the least two substrates of γ-secretase, CD44 and known as (3Koo E.H. Kopan R. Nat. Med. 2004; 10: S26-S33Crossref PubMed Scopus (151) Google are involved in and are known of phagosome membranes S. M. R. T. J. 2003; PubMed Scopus Google Scholar, A. D. B. J. Med. PubMed Scopus Google Scholar). to the γ-secretase complex to phagosomes and γ-secretase cleavage on this In this that all of the components of the γ-secretase on phagosomes of both murine macrophages and Drosophila phagocytic The of γ-secretase on phagosomes that γ-secretase with lipid on phagosome is present as a high molecular mass complex of and catalyzes cleavages on Our results that the γ-secretase complex is an and of suggesting that γ-secretase some of the of this was from the The and polyclonal antibodies and the from The the and from The and and of PS1 (11Thinakaran G. Borchelt D.R. Lee M.K. Slunt H.H. Spitzer L. Kim G. Rotovitsky T. Davenport F. Nordstedt C. Seeger M. Hardy J. Levey A.I. Gandy S.E. Jenkins N.A. Copeland N.G. Price D.L. Sisodia S.S. Neuron. 1996; 17: 181-190Abstract Full Text Full Text PDF PubMed Scopus (939) Google Scholar, G. Price D.L. Borchelt D.R. Sisodia S.S. Neurobiol. 1998; M. PubMed Scopus Google Scholar). The was of S. P. D. M. H. Thinakaran G. J. Biol. Chem. 2002; 277: Full Text Full Text PDF PubMed Scopus Google Scholar). The was of PEN-2 H. H. Kim S. Lee Thinakaran G. Kim G. H. J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar). was the C-terminal of H. B. J. L. G. Seeger M. F. F. Thinakaran G. Sisodia S.S. R. P. Gandy S. Nat. Med. 1998; PubMed Scopus Google Scholar). Cell and murine macrophages in with and at in Drosophila S2 in with and at macrophages in the of interferon-γ or with tumor necrosis factor-α was in the to the of with γ-secretase N-(N-(3,5-difluorophenacetyl-l-alanyl))-S-phenylglycine t-butyl ester or and was in the to the of formed by the of M. G. J. Cell Biol. PubMed Scopus Google Scholar). to the for as in the the was by a the with phosphate-buffered saline and was The for as a and as M. G. J. Cell Biol. PubMed Scopus Google Scholar). and in The in and protease a The was to on a of and with a composed of and at for the phagosomes at the the cell at for a proteins by and and The peptides with in and by mass a to a mass and phagosomes or cell membranes in to and The of proteins and in the was an protein and by of was by phagosome protein with or to the formed by the of for and phagosomes with the in for at The phagosomes with and with or for at The phagosomes with and a the of proteins to phagosomes for at with which consists of a of as S. J. F. S. M. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). of phagosomes in with or and to to from phagosomes as S. J. F. S. M. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). phagosome membranes in or for on from the membranes by on an from which The proteins in with and in Blue the γ-secretase protein complexes from phagosomes by in The to as H. Cell Biol. PubMed Google Scholar). the was to a membrane for or a of the was to to γ-Secretase the of the C-terminal of cleavage by γ-secretase C. Kim T. H. L. R. Sisodia S.S. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google phagosomes in and and at or for The by the of and proteins by The of was by γ-Secretase activity was also with a a the by and a γ-secretase to the The protein in cell membranes or in phagosomes in phagosomes or in cell of membranes or of phagosomes with the for at in the or of and the was a In a recent of proteins on this by mass J. R. S. S. E. R. C. M. J. Cell Biol. PubMed Scopus Google Scholar, S. P. E. P. M. Cell Biol. 2003; Full Text Full Text PDF PubMed Scopus Google Scholar). This the of four of the components of the γ-secretase viz. PS1, PS2, nicastrin, and APH-1 the of these the of γ-secretase components in phagosomes with a cell and a cell membrane was demonstrated in PS1, nicastrin, and PEN-2 enriched on phagosome The PS1 and the of PS1 with full-length PS1 that the form of PS1 to the of that was present in its form The in molecular mass with is expected of proteins as A. F. G. H. S. H. M. Nixon Gandy S.E. P. J. Biol. Chem. 2002; 277: Full Text Full Text PDF PubMed Scopus Google Scholar). The PS1 on phagosomes was present in to a form of the PS1 and a of PS1 cleavage by Tomita T. S. Takahashi M. T. E.H. Iwatsubo T. Thinakaran G. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). Nicastrin and PS1 also by of phagosomes In contrast to the of the phagosome PS1 and was in on phagosomes a that may the of γ-secretase components with lipid microdomains of the γ-secretase protein complex on the phagosomes of murine macrophages and Drosophila S2 by S2 in a the γ-secretase cleavage of on the of the C-terminal fragment of LRP, a of γ-secretase and of the γ-secretase components was in macrophages with for to phagosome phagosomes and of phagosomes from or in was for the The cleavage of the PS1 by is by the in the or of a to the of for and phagosome of phagosomes and the PS1 was by The cleavage of the PS1 by is by the components are associated with phagosome lipid phagosomes from in or the of the membranes on an from the of the from in and was for the and are shown as a for and proteins, γ-Secretase components are proteins from to (1Xia W. Wolfe M.S. J. Cell Sci. 2003; 116: 2839-2844Crossref PubMed Scopus (78) Google Scholar). the of γ-secretase to phagosomes was as phagosomes from Drosophila S2 known to phagocytic M. P. A. B. Nature. 2002; A. PubMed Scopus Google Scholar). γ-Secretase protein on Drosophila S2 phagosomes both by mass and by to the of γ-secretase in macrophages γ-secretase components enriched on phagosomes from S2 with a membrane suggesting that the function of γ-secretase on phagosomes been and maturation complex in the protein of phagosomes M. Nat. Rev. 2003; PubMed Scopus Google Scholar). with phagosomes from phagosomes In contrast to and the proteins of the γ-secretase complex abundant and on phagosomes throughout their maturation into The of γ-secretase with phagosomes also that the complex is not to phagosomes to be results indicate an of the γ-secretase complex on phagosome In a PS1 on M. S. D.J. J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar). phagosomes and may with different intracellular the of the γ-secretase complex found on these and γ-secretase components may be present in different phagosomes a to the membrane topology of phagosomes have indeed been shown to be of membrane from other M. G. J. Cell Biol. PubMed Scopus Google Scholar). the the phagosome membrane the remains and the protein located in the phagosome are from the phagosomes are with of protein on the cytoplasmic of the phagosome are the remain The topology of γ-secretase proteins was by phagosomes with and the of protein was by in the of PS1 indicate that the and cytoplasmic of PS1 are located on the cytoplasmic as as for and PEN-2 are in with the membrane from their and from A. F. G. H. S. H. M. Nixon Gandy S.E. P. J. Biol. Chem. 2002; 277: Full Text Full Text PDF PubMed Scopus Google Scholar, A. Thinakaran G. Borchelt D.R. Slunt H.H. T. M. Selkoe D.J. Seeger M. Gandy S.E. Price D.L. Sisodia S.S. Neuron. 1996; 17: Full Text Full Text PDF PubMed Scopus Google Scholar, X. I. Proc. Natl. Acad. Sci. U. S. A. 1998; PubMed Scopus Google Scholar, G. M. S. D. L. A. E. F. T. A. L. H. E. P. Y. C. E. M. C. Y. R. S. A. P. Nature. PubMed Scopus Google Scholar, T.C. D. Lee J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar). The γ-secretase complex been to associate with lipid domains, also lipid H. W. T. T. N. P.C. H. Thinakaran G. J. Biol. Chem. 2004; 279: Full Text Full Text PDF PubMed Scopus Google Scholar). In is to a role in the of γ-secretase substrates, of H. J. I. M. Beyreuther K. R. T. J. Neurosci. 2002; PubMed Google Scholar). membrane domains from and the of γ-secretase components in a was that the of phagosome membranes in in of γ-secretase components with lipid in in the of of the γ-secretase phagosome results are in with recent that the of γ-secretase is in in other as and H. W. T. T. N. P.C. H. Thinakaran G. J. Biol. Chem. 2004; 279: Full Text Full Text PDF PubMed Scopus Google Scholar). The γ-secretase components are associated with lipid on Current models suggest that γ-secretase activity is within a high molecular mass complex the γ-secretase components (3Koo E.H. Kopan R. Nat. Med. 2004; 10: S26-S33Crossref PubMed Scopus (151) Google Scholar). the of the γ-secretase components on the native of phagosome proteins was The PS1 and of high molecular mass complexes on phagosomes complexes of and the complex was by the Nicastrin and PEN-2 not be the native was for to the of and PEN-2 in the native of the phagosome proteins present in the native by that and PEN-2 indeed of these high molecular mass complexes of the proteins in the native the of APH-1 in to the complex the low of the and complexes may have the of APH-1 in these of the γ-secretase components remain in a high molecular mass complex on the the complex is γ-secretase cleavage of was on shown in the the C-terminal of cleavage by γ-secretase C. Kim T. H. L. R. Sisodia S.S. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google was phagosomes at γ-Secretase activity was also on phagosomes a was to with of and this activity was by the γ-secretase phagosomes also a in activity with cell membranes with the of γ-secretase on results of substrates occurs on this key in in the of and the of protein A. Rev. 2002; PubMed Scopus Google Scholar). are by as an inflammatory that stimulates the activity of and the of at the cell K. T. J. Biol. 2004; PubMed Scopus Google Scholar). inflammatory have recently been shown to γ-secretase activity Wolfe M.S. J. Biol. Chem. 2004; 279: Full Text Full Text PDF PubMed Scopus Google the activity of this complex on macrophages with to phagosome and the of a cleavage on the of LRP, was P. H.H. J. Herz J. J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar). shown in the of by γ-secretase was the of the γ-secretase components on that phagosomes from a in the of the PS1 which to the cleavage of the PS1 by Tomita T. S. Takahashi M. T. E.H. Iwatsubo T. Thinakaran G. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). shown in the of with a indeed this that the PS1 undergoes cleavage on phagosomes and suggesting that this cleavage of the PS1 The the of the not that γ-secretase activity may be by the cleavage of the PS1 are known to in these may or on the activation and of the macrophages K. T. J. Biol. 2004; PubMed Scopus Google Scholar, S. 1999; PubMed Google Scholar). In with results in a to an by the of with K. T. J. Biol. 2004; PubMed Scopus Google and γ-secretase activity to to inflammatory γ-secretase the of and shown in both and two of γ-secretase, in γ-secretase with in a results at the by the of in in a that γ-secretase in a in the of or γ-Secretase activity may in the pathway to the of in macrophages with inflammatory cytokines. The of γ-secretase substrates recently the of two known components of CD44 and the that these and other to be γ-secretase substrates be on to γ-secretase activity is associated with In this have demonstrated that γ-secretase is a and of to essential phagosomes a for γ-secretase in as the of γ-secretase was found to be with that of the γ-secretase components found to be enriched on Drosophila suggesting for γ-secretase on this the of γ-secretase with phagosomes indicate that the of γ-secretase remains throughout Our results indicate that γ-secretase components the of the active as the of high molecular mass complexes and the with lipid Finally, phagosomes shown to γ-secretase of recent studies have on characterizing the complexes of molecular formed by the γ-secretase In with our reports have demonstrated an abundant complex of C. Kim T. H. L. R. Sisodia S.S. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar, D. Winkler E. Haass C. Steiner H. Proc. Natl. Acad. Sci. U. S. A. 2002; PubMed Scopus Google Scholar, S.E. A. B. J. J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar, M. K. A. N. C. P. K. W. B. J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar). In to the γ-secretase complexes from to have also been G. F. G. M. L. E. D. Y. M. J. Biol. Chem. 1998; 273: Full Text Full Text PDF PubMed Scopus Google Scholar, M. J. M.K. Proc. Natl. Acad. Sci. U. S. A. PubMed Scopus Google Scholar). The for the of γ-secretase may on the used in the of the complex and the used to the of the Our results the of complexes of and on the The complex was recently as a low the activity with the abundant complex Y. N. F. H. A. X. W. C. T. G. D. P. J. Biol. Chem. 2004; 279: Full Text Full Text PDF PubMed Scopus Google Scholar). The of the γ-secretase components in these complexes remains to be active γ-secretase complexes on γ-secretase may from different The of by phagocytic the of of Although the membrane in the of an of evidence indicates that the of intracellular membranes at the site of phagosomes is required for M. Nat. Rev. 2003; PubMed Scopus Google Scholar). and for been shown to membranes phagosome L. S. J. Cell Biol. PubMed Scopus Google Scholar, I. P. J. W. Full Text PDF PubMed Scopus Google Scholar). demonstrated that membranes are also to phagosomes E. S. C. E. J. M. 2002; Full Text Full Text PDF PubMed Scopus Google a process that to phagosomes M. S. E. S. G. A. P. D. M. Nature. 2003; PubMed Scopus Google Scholar). proteins of including the and the In with this PS1 was as both full-length PS1, an abundant form in the J. Xia W. Okochi M. H. Selkoe D.J. E.H. J. Biol. Chem. 1998; 273: Full Text Full Text PDF PubMed Scopus Google and PS1, a form in H. W. T. T. N. P.C. H. Thinakaran G. J. Biol. Chem. 2004; 279: Full Text Full Text PDF PubMed Scopus Google Scholar). PS1 was abundant full-length PS1 on in with the of γ-secretase complexes on studies be required to the trafficking pathway for the of γ-secretase on Our results suggest that the of phagosomes be into membrane microdomains as and lipid been shown to be from phagosomes and to be S. J. F. S. M. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). In γ-secretase components are present on newly formed that the γ-secretase complex and associate with lipid In with this our results that γ-secretase and on phagosome membranes different to in and results are in with the recent that γ-secretase and protein proteins in lipid that in H. W. T. T. N. P.C. H. Thinakaran G. J. Biol. Chem. 2004; 279: Full Text Full Text PDF PubMed Scopus Google Scholar). have shown that the intracellular the of lipid a process to the of the to phagosomes S. J. F. S. M. J. Biol. Chem. Full Text Full Text PDF PubMed Scopus Google Scholar). their and of with and lipid may different in pivotal function of phagosomes is in proteins, both to the phagosome and to generate peptides for In this γ-secretase an which to the of membrane proteins in proteins, evidence indicates that the function of by γ-secretase may be to generate active from these membrane γ-secretase membrane proteins, including CD44, and LRP, have indeed been demonstrated to release which are of transcription (3Koo E.H. Kopan R. Nat. Med. 2004; 10: S26-S33Crossref PubMed Scopus (151) Google Scholar, X. Südhof T.C. J. Biol. Chem. 2004; 279: 24609-24611Google Scholar, 5Lammich S. Okochi M. Takeda M. Kaether C. Capell A. Zimmer A.K. Edbauer D. Walter J. Steiner H. Haass C. J. Biol. Chem. 2002; 277: 44754-44759Abstract Full Text Full Text PDF PubMed Scopus (259) Google Scholar). γ-secretase activity may be involved in the different that are of at the of phagocytic recently been shown to the of inflammatory of M. D.R. 2003; Full Text Full Text PDF PubMed Scopus Google Scholar). γ-secretase been to many intracellular M. S. D.J. J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar, S.E. A. B. J. J. Biol. Chem. 2003; 278: Full Text Full Text PDF PubMed Scopus Google Scholar, S. C. S.E. A. B. J. M. J. Biol. Chem. 2004; 279: Full Text Full Text PDF PubMed Scopus Google it is that substrates of γ-secretase Our the that γ-secretase cleavage may to phagosome In with this our results that the γ-secretase cleavage of on In our indicate that γ-secretase is for the phagocytic response of macrophages to and suggesting that γ-secretase cleavage are of the pathway by inflammatory cytokines. studies the role that γ-secretase substrates in this for and all the of the for
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How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".