Phylogenetic analysis of the small subunit ribosomal RNA gene of the hyphochytrid <i>Rhizidiomyces apophysatus</i>
Bibliographic record
Abstract
The potential relationship of the uniflagellate hyphochytrids with biflagellate stramenopiles is still not clearly resolved. Thus, we have expanded the number of isolates and taxa of hyphochytrids compared. The phylogenetic analysis of the small subunit ribosomal RNA sequence of Rhizidiomyces apophysatus Zopf based on neighbour-joining and parsimony methods showed that Hyphochytrium catenoides Karling and R. apophysatus are monophyletic and probably the closest relatives of the oomycetes. Our data also confirmed the monophyly of the stramenopiles, which includes heterokont algae along with nonphotosynthetic fungallike organisms, namely the Oomycota, Hyphochytriomycota, and Labyrinthulomycota.Key words: Hyphochytriomycota, heterokont algae, phylogeny, small subunit ribosomal gene.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".