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Record W2129687578 · doi:10.1038/nbt.1823

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

2011· article· en· W2129687578 on OpenAlexaff
Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James R. Cole, Linda Amaral‐Zettler, Jack A. Gilbert, Ilene Karsch‐Mizrachi, Anjanette Johnston, Guy Cochrane, Robert Vaughan, Chris Hunter, Joonhong Park, Norman Morrison, Philippe Rocca‐Serra, Peter Sterk, Manimozhiyan Arumugam, Mark Bailey, Laura K. Baumgartner, Bruce W. Birren, Martin J. Blaser, Vivien Bonazzi, Tim Booth, Peer Bork, Frederic D. Bushman, Pier Luigi Buttigieg, Patrick Chain, Emily S. Charlson, Elizabeth K. Costello, Heather Huot-Creasy, Peter Dawyndt, Todd Z. DeSantis, Noah Fierer, Jed A. Fuhrman, Rachel E. Gallery, Dirk Gevers, Richard A. Gibbs, Inigo San Gil, Antonio González, Jeffrey I. Gordon, Robert M. Guralnick, Wolfgang Hankeln, Sarah K. Highlander, Philip Hugenholtz, Janet Jansson, Andrew L. Kau, Scott T. Kelley, Jerry Kennedy, Dan Knights, Omry Koren, Justin Kuczynski, Nikos C. Kyrpides, Robert D. Larsen, Christian L. Lauber, Teresa Legg, Ruth E. Ley, Catherine Lozupone, Wolfgang Ludwig, Donna Lyons, Eamonn Maguire, Barbara A. Methé, Folker Meyer, Brian D. Muegge, Sara Nakielny, Diana R. Nemergut, Josh D. Neufeld, Lindsay K. Newbold, Anna Oliver, Norman R. Pace, Jörg Peplies, Joseph F. Petrosino, Lita M. Proctor, Elmar Pruesse, Christian Quast, Jeroen Raes, Sujeevan Ratnasingham, Jacques Ravel, David A. Relman, Susanna‐Assunta Sansone, Patrick D. Schloss, Lynn M. Schriml, Rohini Sinha, Michelle I. Smith, Erica Sodergren, Aymé Spor, Jesse Stombaugh, James M. Tiedje, Doyle V. Ward, George M. Weinstock, Doug Wendel, Owen White, Andrew S. Whiteley, Andreas Wilke, Jennifer R. Wortman, Tanya Yatsunenko, Frank Oliver Glöckner

Bibliographic record

VenueNature Biotechnology · 2011
Typearticle
Languageen
FieldEnvironmental Science
TopicMicrobial Community Ecology and Physiology
Canadian institutionsUniversity of GuelphUniversity of Waterloo
FundersNational Institute of Allergy and Infectious DiseasesNational Institute of Diabetes and Digestive and Kidney DiseasesNational Heart, Lung, and Blood InstituteNatural Environment Research CouncilSight Research UKNational Human Genome Research InstituteHoward Hughes Medical Institute
KeywordsSequence (biology)GeneGeneticsBiologyComputational biology

Abstract

fetched live from OpenAlex
No abstract in any covered source. Its absence is recorded, not treated as a negative.

No abstract. This is not a gap in this database; OpenAlex has none either. 23.3% of the frame is in this state, and the screen finds HALF as much metaresearch here, so the absence is a measured bias rather than a missing field.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.015
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Reporting · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.996
Threshold uncertainty score0.045

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.015
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0020.002
Science and technology studies0.0010.001
Scholarly communication0.0020.004
Open science0.0020.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0140.011

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.228
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
DomainReporting
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations809
Published2011
Admission routes1
Has abstractno

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