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Peroxisome proliferator-activated receptor-alpha (PPARα) suppresses T helper 1 (Th1) cytokine production in male mice by inducing post-translational histone modifications at the interferon-gamma (IFNγ) locus (IRM6P.724)

2014· article· en· W2131831977 on OpenAlexaff
Monan Angela Zhang, Shannon E. Dunn

Bibliographic record

VenueThe Journal of Immunology · 2014
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmune Cell Function and Interaction
Canadian institutionsWomen's College HospitalUniversity of TorontoUniversity Health Network
Fundersnot available
KeywordsChromatin immunoprecipitationBiologyHistonePeroxisome proliferator-activated receptorMolecular biologyCytokineRepressorNuclear receptorPsychological repressionPromoterReceptorTranscription factorGene expressionGeneImmunologyGenetics

Abstract

fetched live from OpenAlex

Abstract Women develop more robust Th1 inflammatory responses than men. Previously, we showed that lower Th1 cytokine responses in males correlated with higher expression of the androgen-sensitive nuclear receptor PPARα, which represses IFNγ production by T cells (Zhang et al. PNAS 2012). The current study aimed to elucidate the molecular mechanism of repression of IFNγ by PPARα in male mouse CD4+ T cells. We first contrasted the expression of various Th-associated genes between anti-CD3 and anti-CD28-stimulated PPARα+/+ (WT) and PPARα-/- (KO) T cells. Of these genes, only T-bet, Eomes, and IFNγ mRNAs were expressed at higher levels in KO vs. WT T cells. Since these genes can reinforce each others’ expression, we further examined their expressions under conditions of either T-bet deficiency or IFNγ neutralization. We found that the higher expressions of T-bet and Eomes were lost, but IFNγ mRNAs remained elevated in KO cells, indicating IFNγ as the likely gene repressed by PPARα. We then performed chromatin immunoprecipitation experiments to examine the abundance of a permissive histone mark (acetylated-H4) and a co-repressor protein (NcoR) at conserved non-coding sequence sites across the ifng locus. We detected global de-repression of ifng in KO vs. WT cells while treating WT cells with a specific agonist induced PPARα recruitment and decreased H4 acetylation at certain sites. Thus, our data suggest that PPARα suppresses IFNγ in males by keeping ifng less poised for transcription.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.012

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.234
Teacher spread0.223 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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