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Record W2152098155 · doi:10.1093/hmg/ddu334

Genetic analysis implicates APOE, SNCA and suggests lysosomal dysfunction in the etiology of dementia with Lewy bodies

2014· article· en· W2152098155 on OpenAlexafffund
José Brás, Rita Guerreiro, Lee Darwent, Laura Parkkinen, Olaf Ansorge, Valentina Escott‐Price, Dena G. Hernandez, Michael A. Nalls, Lorraine N. Clark, Lawrence S. Honig, Karen Marder, Wiesje M. van der Flier, Afina W. Lemstra, Philip Scheltens, Ekaterina Rogaeva, Peter St George‐Hyslop, Elisabet Londos, Henrik Zetterberg, Sara Ortega‐Cubero, Pau Pástor, Tanis J. Ferman, Caroline Graff, Owen A. Ross, Imelda Barber, Anne Braae, Kristelle Brown, Kevin Morgan, Walter Maetzler, Daniela Berg, Claire Troakes, Safa Al‐Sarraj, Tammaryn Lashley, Yaroslau Compta, Tamás Révész, Andrew J. Lees, Nigel J. Cairns, Glenda M. Halliday, David Mann, Stuart Pickering‐Brown, Dennis W. Dickson, Andrew Singleton, John Hardy

Bibliographic record

VenueHuman Molecular Genetics · 2014
Typearticle
Languageen
FieldMedicine
TopicParkinson's Disease Mechanisms and Treatments
Canadian institutionsUniversity of Toronto
FundersNational Institutes of HealthUniversity of New South WalesUniversity of SheffieldNeuroscience Research AustraliaNational Institute of Neurological Disorders and StrokeMinisterio de Ciencia e InnovaciónNational Center for Advancing Translational SciencesWellcome TrustCanadian Institutes of Health ResearchUniversity of DundeeNational Institute on AgingParkinson's Disease FoundationParkinson's UKNational Health and Medical Research CouncilStichting DioraphteVanderbilt University Medical CenterMedical Research CouncilMayo ClinicMichael J. Fox Foundation for Parkinson's Research
KeywordsDementia with Lewy bodiesEtiologyBiologyDementiaParkinson's diseaseApolipoprotein EGlucocerebrosidaseDiseaseGenetic associationLocus (genetics)PathologyGeneticsBioinformaticsMedicineSingle-nucleotide polymorphismGenotypeGene

Abstract

fetched live from OpenAlex

Clinical and neuropathological similarities between dementia with Lewy bodies (DLB), Parkinson's and Alzheimer's diseases (PD and AD, respectively) suggest that these disorders may share etiology. To test this hypothesis, we have performed an association study of 54 genomic regions, previously implicated in PD or AD, in a large cohort of DLB cases and controls. The cohort comprised 788 DLB cases and 2624 controls. To minimize the issue of potential misdiagnosis, we have also performed the analysis including only neuropathologically proven DLB cases (667 cases). The results show that the APOE is a strong genetic risk factor for DLB, confirming previous findings, and that the SNCA and SCARB2 loci are also associated after a study-wise Bonferroni correction, although these have a different association profile than the associations reported for the same loci in PD. We have previously shown that the p.N370S variant in GBA is associated with DLB, which, together with the findings at the SCARB2 locus, suggests a role for lysosomal dysfunction in this disease. These results indicate that DLB has a unique genetic risk profile when compared with the two most common neurodegenerative diseases and that the lysosome may play an important role in the etiology of this disorder. We make all these data available.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.058
Threshold uncertainty score0.394

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.250
Teacher spread0.240 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations240
Published2014
Admission routes2
Has abstractyes

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