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Record W2157237731 · doi:10.1093/hmg/ddv252

Genetic determinants of telomere length and risk of common cancers: a Mendelian randomization study

2015· article· en· W2157237731 on OpenAlexaff
Chenan Zhang, Jennifer A. Doherty, Stephen Burgess, Sara Lindström, Peter Kraft, Jian Gong, Christopher I. Amos, Thomas A. Sellers, Álvaro N.A. Monteiro, Georgia Chenevix‐Trench, Heike Bickeböller, Angela Risch, Paul Brennan, James McKay, Richard S. Houlston, Maria Teresa Landi, Maria Timofeeva, Yufei Wang, Joachim Heinrich, Zsofia Kote‐Jarai, Rosalind A. Eeles, Ken Muir, Fredrik Wiklund, Henrik Grönberg, Sonja I. Berndt, Stephen J. Chanock, Fredrick R. Schumacher, Christopher A. Haiman, Brian E. Henderson, Ali Amin Al Olama, Irene L. Andrulis, John L. Hopper, Jenny Chang‐Claude, Esther M. John, Kathleen E. Malone, Marilie D. Gammon, Giske Ursin, Alice S. Whittemore, David J. Hunter, Stephen B. Gruber, Julia A. Knight, Lifang Hou, Loı̈c Le Marchand, Polly A. Newcomb, Thomas J. Hudson, Andrew T. Chan, Li Li, Michael O. Woods, Habibul Ahsan, Brandon L. Pierce

Bibliographic record

VenueHuman Molecular Genetics · 2015
Typearticle
Languageen
FieldMedicine
TopicTelomeres, Telomerase, and Senescence
Canadian institutionsMemorial University of NewfoundlandOntario Institute for Cancer ResearchPublic Health OntarioUniversity of TorontoLunenfeld-Tanenbaum Research InstituteMount Sinai Hospital
FundersNational Institute of Environmental Health SciencesNational Institute on AgingCancer Research UKUniversity of CambridgeNational Health and Medical Research CouncilMedical Research CouncilNational Institute for Health and Care ResearchNational Institutes of HealthU.S. Department of Health and Human ServicesNational Cancer InstituteBritish Heart FoundationNational Center for Advancing Translational SciencesNational Human Genome Research InstituteWellcome TrustWorld Health Organization
KeywordsMendelian randomizationConfoundingOncologyOdds ratioSingle-nucleotide polymorphismLung cancerInternal medicineMedicineGenetic associationBiologyGeneticsGenotypeGenetic variantsGene

Abstract

fetched live from OpenAlex

Epidemiological studies have reported inconsistent associations between telomere length (TL) and risk for various cancers. These inconsistencies are likely attributable, in part, to biases that arise due to post-diagnostic and post-treatment TL measurement. To avoid such biases, we used a Mendelian randomization approach and estimated associations between nine TL-associated SNPs and risk for five common cancer types (breast, lung, colorectal, ovarian and prostate cancer, including subtypes) using data on 51 725 cases and 62 035 controls. We then used an inverse-variance weighted average of the SNP-specific associations to estimate the association between a genetic score representing long TL and cancer risk. The long TL genetic score was significantly associated with increased risk of lung adenocarcinoma (P = 6.3 × 10(-15)), even after exclusion of a SNP residing in a known lung cancer susceptibility region (TERT-CLPTM1L) P = 6.6 × 10(-6)). Under Mendelian randomization assumptions, the association estimate [odds ratio (OR) = 2.78] is interpreted as the OR for lung adenocarcinoma corresponding to a 1000 bp increase in TL. The weighted TL SNP score was not associated with other cancer types or subtypes. Our finding that genetic determinants of long TL increase lung adenocarcinoma risk avoids issues with reverse causality and residual confounding that arise in observational studies of TL and disease risk. Under Mendelian randomization assumptions, our finding suggests that longer TL increases lung adenocarcinoma risk. However, caution regarding this causal interpretation is warranted in light of the potential issue of pleiotropy, and a more general interpretation is that SNPs influencing telomere biology are also implicated in lung adenocarcinoma risk.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.023
metaresearch head score (Gemma)0.056
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.023
Threshold uncertainty score0.122

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0230.056
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.308
Teacher spread0.279 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations144
Published2015
Admission routes1
Has abstractyes

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