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Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing

2011· review· en· W2164756176 on OpenAlexaff
T. Alexander Quinn, Stephen J. Granite, Maurits A. Allessie, Charles Antzelevitch, Christian Bollensdorff, Gil Bub, Rebecca A.B. Burton, Elisabetta Cerbai, Pisin Chen, Mario Delmar, Dario DiFrancesco, Y.E. Earm, Igor R. Efimov, M. Egger, Emilia Entcheva, Martin Fink, Rodolphe Fischmeister, Michael R. Franz, Alan Garny, Wayne R. Giles, Tobias Hannes, Siân E. Harding, Peter Hunter, Gentaro Iribe, José Jalife, Chris R. Johnson, Robert S. Kass, Itsuo Kodama, Gideon Koren, Phillip Lord, Markhasin Vs, Satoshi Matsuoka, Andrew D. McCulloch, Gary R. Mirams, Glenn Morley, Stanley Nattel, Denis Noble, Søren‐Peter Olesen, Alexander V. Panfilov, Natalia A. Trayanova, Ursula Ravens, Sylvain Richard, David Rosenbaum, Yoram Rudy, Frederick Sachs, Frank B. Sachse, David A. Saint, Ulrich Schotten, Olga Solovyova, Peter Taggart, L. Tung, András Varró, Paul G.A. Volders, Ken Wang, James N. Weiss, E. Wettwer, Ed White, Ronald Wilders, R.L. Winslow, Peter Köhl

Bibliographic record

VenueProgress in Biophysics and Molecular Biology · 2011
Typereview
Languageen
FieldMedicine
TopicCardiac electrophysiology and arrhythmias
Canadian institutionsUniversity of Calgary
FundersNational Institute of General Medical SciencesNational Human Genome Research InstituteNational Heart, Lung, and Blood InstituteEngineering and Physical Sciences Research CouncilNational Institutes of HealthEuropean CommissionBritish Heart Foundation
KeywordsInteroperabilityCardiac electrophysiologyComputer scienceElectrophysiologyChannel (broadcasting)PsychologyNeuroscienceWorld Wide WebTelecommunications

Abstract

fetched live from OpenAlex

Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.136
metaresearch head score (Gemma)0.129
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Reporting · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.864
Threshold uncertainty score0.718

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1360.129
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0040.003
Bibliometrics0.0080.005
Science and technology studies0.0020.006
Scholarly communication0.0060.008
Open science0.0080.006
Research integrity0.0060.006
Insufficient payload (model declined to judge)0.0050.008

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.075
GPT teacher head0.412
Teacher spread0.337 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
DomainReporting
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations77
Published2011
Admission routes1
Has abstractyes

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