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Record W2231798535 · doi:10.1038/onc.2015.364

Hepatitis C virus upregulates B-cell receptor signaling: a novel mechanism for HCV-associated B-cell lymphoproliferative disorders

2015· article· en· W2231798535 on OpenAlexafffund
Bi-tao Dai, Alice Y. Chen, Christopher Corkum, Raymond J. Peroutka, Ari L. Landon, Simone Houng, Parameswary A. Muniandy, Y Zhang, Elin Lehrmann, Krystyna Mazan-Mamczarz, James J. Steinhardt, Mike Shlyak, Q C Chen, Kevin G. Becker, Ferenc Livák, Tomasz I. Michalak, Rohit Talwani, R B Gartenhaus

Bibliographic record

VenueOncogene · 2015
Typearticle
Languageen
FieldMedicine
TopicHepatitis C virus research
Canadian institutionsMemorial University of Newfoundland
FundersMarlene and Stewart Greenebaum Comprehensive Cancer Center, University of MarylandNational Cancer InstituteNational Institutes of HealthCanadian Institutes of Health ResearchU.S. Department of Veterans AffairsAcademia SinicaNational Institute on Alcohol Abuse and AlcoholismUniversity of Washington
KeywordsBiologyLymphoproliferative disordersHepatitis C virusB cellVirologyLymphomaB-cell receptorbreakpoint cluster regionDownregulation and upregulationImmunologyNS3CellSignal transductionVirusHepatitis B virusCancer researchReceptorAntibodyCell biologyGeneticsGene

Abstract

fetched live from OpenAlex

B-cell receptor (BCR) signaling is essential for the development of B cells and has a critical role in B-cell neoplasia. Increasing evidence indicates an association between chronic hepatitis C virus (HCV) infection and B-cell lymphoma, however, the mechanisms by which HCV causes B-cell lymphoproliferative disorder are still unclear. Herein, we demonstrate the expression of HCV viral proteins in B cells of HCV-infected patients and show that HCV upregulates BCR signaling in human primary B cells. HCV nonstructural protein NS3/4A interacts with CHK2 and downregulates its activity, modulating HuR posttranscriptional regulation of a network of target mRNAs associated with B-cell lymphoproliferative disorders. Interestingly, the BCR signaling pathway was found to have the largest number of transcripts with increased association with HuR and was upregulated by NS3/4A. Our study reveals a previously unidentified role of NS3/4A in regulation of host BCR signaling during HCV infection, contributing to a better understanding of the molecular mechanisms underlying HCV-associated B-cell lymphoproliferative disorders.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.030
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.046
GPT teacher head0.305
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations50
Published2015
Admission routes2
Has abstractyes

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