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Re‐investigation into the Ligand Selectivity of OAT2

2015· article· en· W2291151676 on OpenAlexafffund
Adam Hotchkiss, Mansong Li, Leslie Ingraham, Ryan M. Pelis

Bibliographic record

VenueThe FASEB Journal · 2015
Typearticle
Languageen
FieldMedicine
TopicDrug Transport and Resistance Mechanisms
Canadian institutionsDalhousie University
FundersCanadian Institutes of Health ResearchNova Scotia Health Research Foundation
KeywordsChemistryOrganic anion transporter 1Ligand (biochemistry)In vitroIn vivoOrganic anionBiochemistryTransfectionCell cultureHEK 293 cellsTransporterPharmacologyReceptorStereochemistryBiologyGene

Abstract

fetched live from OpenAlex

There are discrepancies in the literature regarding ligand selectivity of organic anion transporter 2 (OAT2). The purpose of this study was to re‐examine the interaction of ligands with both transcript variants of OAT2 since it is not known whether they are functionally distinct. The two splice variants of human OAT2 (OAT2‐TV1 and OAT2‐TV2) were stably transfected into three cell lines (CHO, HEK and MDCK), and the interaction of previously identified substrates and inhibitors was assessed. Expression of both transcript variants was confirmed at the mRNA level, but only OAT2‐TV1 protein was detected at the cell surface. Uptake of penciclovir was ~1.5‐20 fold higher in OAT2‐TV1 cells compared to control, but para‐aminohippurate (PAH), estrone sulfate (ES), succinate and glutarate transport was not observed. Eight Krebs cycle intermediates (1mM) failed to cis‐inhibit penciclovir uptake. Conversely, cis‐inhibition by a structurally diverse set of xenobiotic drugs, including anions, cations and neutral compounds suggests that OAT2‐TV1 is broadly selective. Treatment of cells with sulfo‐NHS‐SS biotin inhibited penciclovir transport. Co‐treatment of cells with furosemide along with sulfo‐NHS‐SS biotin ameliorated transport activity, suggesting that lysine residue(s) line the ligand binding surface. These results show that OAT2‐TV2 is non‐functional in mammalian cells, likely due to a trafficking defect. Additionally, lack of mediated transport or cis‐inhibition by several previously reported compounds highlights the necessity to re‐examine ligand selectivity of OAT2‐TV1 to better understand its importance in pharmacokinetics. Supported by CIHR and NSHRF.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.030
GPT teacher head0.261
Teacher spread0.231 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes2
Has abstractyes

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