MétaCan
Menu
Back to cohort
Record W2407306171 · doi:10.1038/npjbcancer.2016.14

Analytical validation of a standardized scoring protocol for Ki67: phase 3 of an international multicenter collaboration

2016· article· en· W2407306171 on OpenAlexafffund
Samuel Leung, Torsten O. Nielsen, Lila Zabaglo, Indu Arun, Sunil Badve, Anita Bane, John M.S. Bartlett, Signe Borgquist, Martin C. Chang, Andrew Dodson, Rebecca A. Enos, Susan Fineberg, Cornelia M. Focke, Dongxia Gao, Allen M. Gown, Dorthe Grabau, Carolina Gutiérrez, Judith Hugh, Zuzana Kos, Anne‐Vibeke Lænkholm, Minggang Lin, Mauro G. Mastropasqua, Takuya Moriya, Sharon Nofech‐Mozes, C. Kent Osborne, Frédérique Penault‐Llorca, Tammy Piper, Takashi Sakatani, Roberto Salgado, Jane Starczynski, Giuseppe Viale, Daniel F. Hayes, Lisa M. McShane, Mitch Dowsett

Bibliographic record

Venuenpj Breast Cancer · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBreast Cancer Treatment Studies
Canadian institutionsSunnybrook Health Science CentreOttawa HospitalUniversity of AlbertaOntario Institute for Cancer ResearchJuravinski HospitalMcMaster UniversityHealth Sciences CentreMount Sinai HospitalUniversity of British Columbia
FundersCure Brain Cancer FoundationNational Institute for Health and Care ResearchNIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer ResearchGovernment of OntarioOntario Institute for Cancer ResearchBreast Cancer Research Foundation
KeywordsIntraclass correlationExternal quality assessmentReproducibilityMedicineNuclear proliferationProtocol (science)Breast cancerCore biopsyConfidence intervalBiomarkerMulticenter studyNuclear medicinePathologyStatisticsInternal medicineCancerMathematicsRandomized controlled trial

Abstract

fetched live from OpenAlex

Pathological analysis of the nuclear proliferation biomarker Ki67 has multiple potential roles in breast and other cancers. However, clinical utility of the immunohistochemical (IHC) assay for Ki67 immunohistochemistry has been hampered by unacceptable between-laboratory analytical variability. The International Ki67 Working Group has conducted a series of studies aiming to decrease this variability and improve the evaluation of Ki67. This study tries to assess whether acceptable performance can be achieved on prestained core-cut biopsies using a standardized scoring method. Sections from 30 primary ER+ breast cancer core biopsies were centrally stained for Ki67 and circulated among 22 laboratories in 11 countries. Each laboratory scored Ki67 using three methods: (1) global (4 fields of 100 cells each); (2) weighted global (same as global but weighted by estimated percentages of total area); and (3) hot-spot (single field of 500 cells). The intraclass correlation coefficient (ICC), a measure of interlaboratory agreement, for the unweighted global method (0.87; 95% credible interval (CI): 0.81-0.93) met the prespecified success criterion for scoring reproducibility, whereas that for the weighted global (0.87; 95% CI: 0.7999-0.93) and hot-spot methods (0.84; 95% CI: 0.77-0.92) marginally failed to do so. The unweighted global assessment of Ki67 IHC analysis on core biopsies met the prespecified criterion of success for scoring reproducibility. A few cases still showed large scoring discrepancies. Establishment of external quality assessment schemes is likely to improve the agreement between laboratories further. Additional evaluations are needed to assess staining variability and clinical validity in appropriate cohorts of samples.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.251
metaresearch head score (Gemma)0.120
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.251
Threshold uncertainty score0.924

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2510.120
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0040.005
Science and technology studies0.0040.005
Scholarly communication0.0030.002
Open science0.0060.006
Research integrity0.0040.003
Insufficient payload (model declined to judge)0.0020.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.399
Teacher spread0.374 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations154
Published2016
Admission routes2
Has abstractyes

Explore more

Same venuenpj Breast CancerSame topicBreast Cancer Treatment StudiesFrench-language works237,207