MétaCan
Menu
Back to cohort
Record W2560135976 · doi:10.1681/asn.2016010069

Genetic Variants Associated with Circulating Parathyroid Hormone

2016· article· en· W2560135976 on OpenAlexaff
Cassianne Robinson‐Cohen, Pamela L. Lutsey, Marcus E. Kleber, Carrie M. Nielson, Braxton D. Mitchell, Joshua C. Bis, Karen Eny, Laura Portas, Joel Eriksson, Mattias Lorentzon, Daniel L. Koller, Yuri Milaneschi, Alexander Teumer, Stefan Pilz, Maria Nethander, Elizabeth Selvin, Weihong Tang, Lu‐Chen Weng, Hoi Suen Wong, Dongbing Lai, Munro Peacock, Anke Hannemann, Uwe Völker, Georg Homuth, Matthias Nauk, Federico Murgia, Jack Pattee, Eric Orwoll, Joseph M. Zmuda, José A. Riancho, Myles Wolf, Frances M. K. Williams, Brenda W.J.H. Penninx, Michael J. Econs, Kathleen A. Ryan, Claes Ohlsson, Andrew D. Paterson, Bruce M. Psaty, David S. Siscovick, Jerome I. Rotter, Mario Pirastu, Elizabeth A. Streeten, Winfried März, Caroline S. Fox, Josef Coresh, Henri Wallaschofski, James S. Pankow, Ian H. de Boer, Bryan Kestenbaum

Bibliographic record

VenueJournal of the American Society of Nephrology · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Syndromes and Imprinting
Canadian institutionsHospital for Sick Children
FundersNational Center for Research ResourcesU.S. National Library of MedicineNational Institute of General Medical SciencesNational Human Genome Research InstituteNational Institute of Mental HealthNational Heart, Lung, and Blood InstituteNational Institute on AgingNational Institutes of HealthMinistry of Cultural AffairsRoche Diabetes CareAbbott Diabetes CareUniversitair Medisch Centrum GroningenGöteborgs LäkaresällskapSiemensVetenskapsrådetNovo NordiskBundesministerium für Bildung und ForschungVrije Universiteit AmsterdamStiftelsen för Strategisk ForskningNational Center for Advancing Translational SciencesLeids Universitair Medisch CentrumUniversiteit LeidenInsulet CorporationNiproNederlandse Organisatie voor Wetenschappelijk OnderzoekWellcome TrustNational Institute of Arthritis and Musculoskeletal and Skin DiseasesNational Institute of Diabetes and Digestive and Kidney DiseasesSanofiEuropean CommissionUniversität GreifswaldJohns Hopkins UniversityEli Lilly and CompanyNovo Nordisk FondenFoundation for the National Institutes of Health
KeywordsParathyroid hormoneCYP24A1Single-nucleotide polymorphismInternal medicineEndocrinologyVitamin D and neurologyMinor allele frequencyBiologySecondary hyperparathyroidismSNPCalcitriol receptorMedicineGenotypeGeneticsCalciumGene

Abstract

fetched live from OpenAlex

Parathyroid hormone (PTH) is a primary calcium regulatory hormone. Elevated serum PTH concentrations in primary and secondary hyperparathyroidism have been associated with bone disease, hypertension, and in some studies, cardiovascular mortality. Genetic causes of variation in circulating PTH concentrations are incompletely understood. We performed a genome-wide association study of serum PTH concentrations among 29,155 participants of European ancestry from 13 cohort studies ( n =22,653 and n =6502 in discovery and replication analyses, respectively). We evaluated the association of single nucleotide polymorphisms (SNPs) with natural log-transformed PTH concentration adjusted for age, sex, season, study site, and principal components of ancestry. We discovered associations of SNPs from five independent regions with serum PTH concentration, including the strongest association with rs6127099 upstream of CYP24A1 ( P =4.2 × 10 −53 ), a gene that encodes the primary catabolic enzyme for 1,25-dihydroxyvitamin D and 25-dihydroxyvitamin D. Each additional copy of the minor allele at this SNP associated with 7% higher serum PTH concentration. The other SNPs associated with serum PTH concentration included rs4074995 within RGS14 ( P =6.6 × 10 −17 ), rs219779 adjacent to CLDN14 ( P =3.5 × 10 −16 ), rs4443100 near RTDR1 ( P =8.7 × 10 −9 ), and rs73186030 near CASR ( P =4.8 × 10 −8 ). Of these five SNPs, rs6127099, rs4074995, and rs219779 replicated. Thus, common genetic variants located near genes involved in vitamin D metabolism and calcium and renal phosphate transport associated with differences in circulating PTH concentrations. Future studies could identify the causal variants at these loci, and the clinical and functional relevance of these variants should be pursued.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.971
Threshold uncertainty score0.252

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.229
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations70
Published2016
Admission routes1
Has abstractyes

Explore more

Same venueJournal of the American Society of NephrologySame topicGenetic Syndromes and ImprintingFrench-language works237,207