A290 THE ATF6 ARM OF ER STRESS ANTAGONIZES METABOLIC STRESS-INDUCED DECREASES IN EPITHELIAL BARRIER FUNCTION TO COMMENSAL BACTERIA BY PROMOTING XENOPHAGY
Bibliographic record
Abstract
The barrier function of the intestinal epithelium is a first-line of defense that is compromised in IBD. We have shown that epithelia treated with dinitrophenol (DNP: uncouples oxidative phosphorylation) have a dramatic impairment in their barrier function, and internalize non-invasive commensal E. coli. Mitochondria do not function in isolation; they are closely aligned with the endoplasmic reticulum (ER). To investigate the interaction of mitochondrial dysfunction, ER stress and autophagic processes as a key determinant of epithelial-bacterial interaction, transcellular permeability and the fate of commensal bacteria that gain access to the intracellular compartment as a consequence of metabolic stress. Human colonic biopsies were mounted in Ussing chambers, murine epithelial colonic organoids were re-suspended and grown as a monolayer, and human colon-derived epithelial cell lines were cultured on transwell filters or on plastic. Bacteria were added to the luminal buffer and the tissue treated with DNP ± the ER stressor, tunicamycin (TM), and bacterial internalization and translocation assessed. Mechanistic studies involved measuring ATP production, immunoblotting, assessment of LC3 activation for autophagy and gene knock-down (KD) by siRNA and CRISPR/cas9. DNP promoted the translocation and internalization of E. coli and, remarkably, TM reduced this barrier defect. TM did not prevent the DNP-evoked drop in ATP or the rate of epithelial update of inert beads, but E. coli, DNP and TM-treated cells had increased autophagy. The effect of TM was lost in cells lacking the autophagy protein, ATG16L1, suggesting that the ER-stress promoted killing of the internalized bacteria. Of the 3 major arms of the ER stress response, only KD of ATF6 ablated the TM antagonism of the DNP-evoked barrier effect; the increase in autophagy evoked by TM was absent in ATF6 KD epithelia. Pharmacological studies indicate that the kinase, DAPK1 is required from the ER stress-ATF6 signal to drive autophagy to kill the internalized E. coli. Conclusion: The ATF6 arm of ER stress antagonizes metabolic stress-induced decreases in epithelial barrier function to commensal bacteria by promoting xenophagy via upregulation of DAPK1. CAG, CIHRAIHS, HPI-NSERC, CNPq
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.004 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".