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Record W2790232800 · doi:10.1093/jcag/gwy008.291

A290 THE ATF6 ARM OF ER STRESS ANTAGONIZES METABOLIC STRESS-INDUCED DECREASES IN EPITHELIAL BARRIER FUNCTION TO COMMENSAL BACTERIA BY PROMOTING XENOPHAGY

2018· article· en· W2790232800 on OpenAlexaff
Fernando Lopes, Åsa V. Keita, José Luis Reyes, Nicole L. Mancini, Ala Al Rajabi, Alpana Saxena, A Wang, Rob van Dalen, Wallace K. MacNaughton, Humberto Jijon, J D Söderholm, Dana J. Philpott, Derek M. McKay

Bibliographic record

VenueJournal of the Canadian Association of Gastroenterology · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGut microbiota and health
Canadian institutionsUniversity of TorontoUniversity of Calgary
Fundersnot available
KeywordsFunction (biology)BacteriaStress (linguistics)Cell biologyUnfolded protein responseBiologyMicrobiologyEndoplasmic reticulumGenetics

Abstract

fetched live from OpenAlex

The barrier function of the intestinal epithelium is a first-line of defense that is compromised in IBD. We have shown that epithelia treated with dinitrophenol (DNP: uncouples oxidative phosphorylation) have a dramatic impairment in their barrier function, and internalize non-invasive commensal E. coli. Mitochondria do not function in isolation; they are closely aligned with the endoplasmic reticulum (ER). To investigate the interaction of mitochondrial dysfunction, ER stress and autophagic processes as a key determinant of epithelial-bacterial interaction, transcellular permeability and the fate of commensal bacteria that gain access to the intracellular compartment as a consequence of metabolic stress. Human colonic biopsies were mounted in Ussing chambers, murine epithelial colonic organoids were re-suspended and grown as a monolayer, and human colon-derived epithelial cell lines were cultured on transwell filters or on plastic. Bacteria were added to the luminal buffer and the tissue treated with DNP ± the ER stressor, tunicamycin (TM), and bacterial internalization and translocation assessed. Mechanistic studies involved measuring ATP production, immunoblotting, assessment of LC3 activation for autophagy and gene knock-down (KD) by siRNA and CRISPR/cas9. DNP promoted the translocation and internalization of E. coli and, remarkably, TM reduced this barrier defect. TM did not prevent the DNP-evoked drop in ATP or the rate of epithelial update of inert beads, but E. coli, DNP and TM-treated cells had increased autophagy. The effect of TM was lost in cells lacking the autophagy protein, ATG16L1, suggesting that the ER-stress promoted killing of the internalized bacteria. Of the 3 major arms of the ER stress response, only KD of ATF6 ablated the TM antagonism of the DNP-evoked barrier effect; the increase in autophagy evoked by TM was absent in ATF6 KD epithelia. Pharmacological studies indicate that the kinase, DAPK1 is required from the ER stress-ATF6 signal to drive autophagy to kill the internalized E. coli. Conclusion: The ATF6 arm of ER stress antagonizes metabolic stress-induced decreases in epithelial barrier function to commensal bacteria by promoting xenophagy via upregulation of DAPK1. CAG, CIHRAIHS, HPI-NSERC, CNPq

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.232
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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