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Record W2790874700 · doi:10.1093/jcag/gwy008.209

A208 SHP-2 PHOSPHATASE PREVENTS SENESCENCE IN NORMAL AND TUMOR INTESTINAL EPITHELIAL CELLS

2018· article· en· W2790874700 on OpenAlexaff
Vanessa Vaillancourt‐Lavigueur, J Gagné Sansfaçon, Marie‐Josée Langlois, Nathalie Rivard

Bibliographic record

VenueJournal of the Canadian Association of Gastroenterology · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtein Tyrosine Phosphatases
Canadian institutionsUniversité de Sherbrooke
Fundersnot available
KeywordsBiologyGene silencingProtein tyrosine phosphataseCell biologyCell growthWnt signaling pathwayCell cycleCarcinogenesisCancer researchPhosphataseSenescenceSignal transductionMolecular biologyCellPhosphorylationCancerBiochemistryGeneGenetics

Abstract

fetched live from OpenAlex

The protein tyrosine phosphatase SHP-2 is known to regulate many cellular functions including growth, differentiation and survival. Interestingly, a gain-of-function mutation (residue E76K) in the gene encoding SHP-2 has been found in some colorectal cancers. Importantly, intestinal epithelial cell (IEC)-specific expression of SHP-2E76K mutant in mice was not sufficient to induce tumorigenesis but markedly promoted tumor growth under the ApcMin/+ background. Conversely, SHP-2 silencing inhibited anchorage-independent growth of human CRC cells (Gagné-Sansfaçon et al., Oncotarget 2016). However, the molecular mechanisms involved in the pro-oncogenic action of SHP-2 remained to be identified. To determine a possible role of the protein tyrosine phosphatase SHP-2 in the development of senescence. Non immortalized human intestinal epithelial cells (HIEC) and human colorectal cancer cells (HCT116) were infected with lentiviruses encoding a shRNA directed against SHP-2. The impact on growth was assessed by BrdU incorporation, SA-β-galactosidase staining and qPCR or immunoblot analyses of regulatory proteins and signaling pathways regulating the cell cycle. SHP-2 deletion was induced ex vivo in intestinal organoids and the impact on organoid development was analyzed. SHP-2 silencing in HIEC changes cell morphology and results in the activation of the Wnt/β-catenin pathway and in the decreased activation of ERK1/2 MAP Kinases. Few days after silencing, the number of cells in S phase is significantly decreased and senescence (SA-β-galactosidase staining) as well as DNA damage (γH2AX) are observed. Western blot and qPCR analyses demonstrate increased expression of the cell cycle inhibitor p27 and increased phosphorylation of p53 on serine 15. Finally, deletion of SHP-2 in enteroids clearly limits their proliferative capacity and development; notably, few days after, organoids loose their integrity and degenerate in contrast to control organoids that continue to develop. In summary, our results suggest that SHP-2 protects intestinal epithelial cells against an oncogenic stress leading to senescence. CIHRCRS

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.209
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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Same venueJournal of the Canadian Association of GastroenterologySame topicProtein Tyrosine PhosphatasesFrench-language works237,207