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Record W2886497950 · doi:10.1038/s41467-018-05427-7

Identification of nine new susceptibility loci for endometrial cancer

2018· article· en· W2886497950 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueNature Communications · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related molecular mechanisms research
Canadian institutionsAlberta Health Services
FundersNational Cancer InstituteNational Health and Medical Research CouncilMedical Research CouncilNational Institutes of HealthVincent Fairfax Family FoundationHaukeland UniversitetssjukehusNorges ForskningsrådUniversitetet i BergenHelse VestEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentKarolinska InstitutetCancer Council QueenslandMinisterio de Economía y CompetitividadCanadian Institutes of Health ResearchCancerfondenAgency for Science, Technology and ResearchHunter Medical Research InstituteNational Institute on AgingNational Institute for Health and Care ResearchNational Heart, Lung, and Blood InstituteFred C. and Katherine B. Andersen FoundationCancer Research UKWellcome TrustBreast Cancer Research FoundationUniversity of CambridgeKreftforeningenU.S. Public Health ServiceGenome CanadaMayo Foundation for Medical Education and ResearchCancer Council TasmaniaBrigham and Women's HospitalWomen's Health InitiativeRoswell Park Cancer InstituteFred Hutchinson Cancer Research CenterU.S. Department of Health and Human ServicesOvarian Cancer Research FundStockholms Läns LandstingQIMR Berghofer Medical Research InstituteEuropean CommissionSusan G. Komen for the Cure
KeywordsEndometrial cancerGenome-wide association studyExpression quantitative trait lociLocus (genetics)BiologyQuantitative trait locusGeneticsAlleleGenetic associationCandidate geneGeneGenotypeColorectal cancerCancerSingle-nucleotide polymorphism

Abstract

fetched live from OpenAlex

Endometrial cancer is the most commonly diagnosed cancer of the female reproductive tract in developed countries. Through genome-wide association studies (GWAS), we have previously identified eight risk loci for endometrial cancer. Here, we present an expanded meta-analysis of 12,906 endometrial cancer cases and 108,979 controls (including new genotype data for 5624 cases) and identify nine novel genome-wide significant loci, including a locus on 12q24.12 previously identified by meta-GWAS of endometrial and colorectal cancer. At five loci, expression quantitative trait locus (eQTL) analyses identify candidate causal genes; risk alleles at two of these loci associate with decreased expression of genes, which encode negative regulators of oncogenic signal transduction proteins (SH2B3 (12q24.12) and NF1 (17q11.2)). In summary, this study has doubled the number of known endometrial cancer risk loci and revealed candidate causal genes for future study.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.751
Threshold uncertainty score0.379

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.382
Teacher spread0.353 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it