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Comparison of reporting phase I trial results in ClinicalTrials.gov and matched publications.

2017· article· en· W2892092015 on OpenAlexaff
Daniel Shepshelovich, Hadar Goldvaser, Lisa Wang, Albiruni Ryan Abdul Razak, Philippe L. Bédard

Bibliographic record

VenueJournal of Clinical Oncology · 2017
Typearticle
Languageen
FieldDecision Sciences
TopicMeta-analysis and systematic reviews
Canadian institutionsPrincess Margaret Cancer CentreUniversity Health Network
Fundersnot available
KeywordsMedicineClinical trialInterquartile rangeAdverse effectInternal medicineClinical endpoint

Abstract

fetched live from OpenAlex

6514 Background: The 2007 Food and Drug Administration (FDA) Amendments Act mandated reporting of results of clinical trials in ClinicalTrials.gov, a large public registry, within 12 months of completion. We compared results reported for phase I trials in ClinicalTrials.gov and matched primary publications. Methods: The ClinicalTrials.Gov database was searched for completed adult phase I cancer trials with reported results. Only trials with dose escalation of systemically administered medications were included. PubMed was searched for matching primary publications, defined as identical intervention, number of arms and enrolled subjects, published prior to November 1, 2016. Results reported in the primary publication were compared with the ClinicalTrials.gov database using a 28-point score (2 = complete agreement; 1 = partial agreement; 0 = no mention) for 14-items related to study design (4 items), outcome measures (4 items) and safety profile (6 items). The ClinicalTrials.gov database was used as the reference for results reporting. Linear regression was used to identify factors associated with incomplete reporting. Results: After a review of 583 trials in ClinicalTrials.gov, 163 matching primary publications were identified, comprising 95 (58%) phase I and 68 (42%) phase I/II trials. Publications reported outcomes that did not appear in ClinicalTrials.gov in 25% of trials. Outcomes were omitted or downgraded in publications in 39% of trials. The overall median reporting score was 23/28 (interquartile range 21-25). Items that were incompletely reported in publications were: inclusion criteria (29%), primary outcome definition (26%), secondary outcome definitions (53%), adverse events (71%), serious adverse events (80%) and dates of study start and database lock (91%). Phase I (p < 0.001) and multicenter trials (p = 0.002) were associated with higher reporting scores than phase I/II and single center trials. Conclusions: Reported results in primary publications for early phase cancer trials are frequently inconsistent or incomplete compared with ClinicalTrials.gov entries. ClinicaTrials.gov may provide a more comprehensive overview of safety data from new cancer drug trials.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.483
metaresearch head score (Gemma)0.801
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reporting · Consensus signal: Reporting
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.517
Threshold uncertainty score0.637

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.4830.801
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0090.011
Bibliometrics0.0540.061
Science and technology studies0.0010.003
Scholarly communication0.0130.014
Open science0.0050.011
Research integrity0.0040.003
Insufficient payload (model declined to judge)0.0220.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.975
GPT teacher head0.792
Teacher spread0.183 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designObservational
DomainReporting
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes1
Has abstractyes

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