MétaCan
Menu
Back to cohort
Record W2943628838 · doi:10.1101/622761

The effect of number of healthcare visits on study sample selection and prevalence estimates in electronic health record data

2019· preprint· en· W2943628838 on OpenAlexaff
Laura J. Rasmussen‐Torvik, Al’ona Furmanchuk, Alexander J. Stoddard, Kristen Osinski, John Meurer, Nicholas Smith, Elizabeth A. Chrischilles, Bernard S. Black, Abel Kho

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2019
Typepreprint
Languageen
FieldHealth Professions
TopicMedical Coding and Health Information
Canadian institutionsKellogg's (Canada)
FundersNational Center for Advancing Translational SciencesNational Institute of Diabetes and Digestive and Kidney DiseasesCenters for Disease Control and PreventionNational Institutes of Health
KeywordsSample (material)Electronic health recordMedicineHealth careSample size determinationSNOMED CTHealth dataFamily medicineStatisticsTerminologyMathematics

Abstract

fetched live from OpenAlex

Abstract Introduction Few studies have addressed how to select a study sample when using electronic health record (EHR) data. Methods Year 2016 EHR data from three health systems was used to examine how alternate definitions of the study sample, based on number of healthcare visits in one year, affected measures of disease period prevalence. Curated collections of ICD-9, ICD-10, and SNOMED codes were used to define three diseases. Results Across all health systems, increasing the minimum required number of visits to be included in the study sample monotonically increased crude period prevalence estimates. The rate at which prevalence estimates increased with number of visits varied across sites and across diseases. Conclusions When using EHR data authors must carefully describe how a study sample is identified and report outcomes for a range of sample definitions, so that others can assess the sensitivity of reported results to sample definition in EHR data.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.008
metaresearch head score (Gemma)0.003
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0080.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.002
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.076
GPT teacher head0.405
Teacher spread0.329 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2019
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicMedical Coding and Health InformationFrench-language works237,207