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Record W2987809293 · doi:10.7554/elife.15258.017

Author response: The E3 ligase Ubr3 regulates Usher syndrome and MYH9 disorder proteins in the auditory organs of Drosophila and mammals

2016· peer-review· en· W2987809293 on OpenAlexaff
Tongchao Li, Νικόλαος Γιαγτζόγλου, Daniel F. Eberl, Sonal Nagarkar-Jaiswal, Tiantian Cai, Dorothea Godt, Andrew K. Groves, Hugo J. Bellen

Bibliographic record

Venuenot available
Typepeer-review
Languageen
FieldNeuroscience
TopicHearing, Cochlea, Tinnitus, Genetics
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsMyosinBiologyGeneticsUbiquitin ligaseGenetic screenDrosophila melanogasterPhenocopyUsher syndromeGeneCell biologyMutantUbiquitin

Abstract

fetched live from OpenAlex

Over half of the world’s population has hearing loss by the age of 65, and inherited forms of deafness are responsible for many of the hearing impairments in newborn children. Because the auditory organs that enable insects and mammals to hear work in similar ways, we have learnt a lot about genetic forms of deafness from identifying faulty genes in humans and mice, and studying their effects in model organisms. Sensory cells in the inner ear respond to sound by detecting vibrations in the air and converting them into electrical impulses. A family of motor proteins called myosins play key roles in this conversion process. Mutations in the gene that produces one of these proteins, called myosin VIIa, cause an inherited deaf-blind disorder called Usher syndrome. Mutations in the gene for another type of myosin protein, called myosin II, also cause disorders associated with hearing loss, but it is not clear how they produce such effects. Li et al. have used Drosophila fruit flies to explore the role of myosin proteins in hearing by looking for genes that prevent the insect's auditory organ from developing or working properly. The search identified one gene called E3 ubiquitin ligase (ubr3), which is required for the auditory organ to develop normally and had not previously been implicated in deafness. Mutating the ubr3 gene caused a defect similar to that seen for mutations in the gene that produces the fruit fly equivalent of myosin VIIa. Through genetic and biochemical studies, Li et al. found that in the fruit flies, myosin VIIa interacts with myosin II. This interaction is regulated by a chemical modification of myosin II that is controlled by ubr3. Li et al. showed that the equivalent mammalian proteins display the same behaviour in the cells of mammals. Therefore, mutations that affect myosin II alter how the protein interacts with myosin VIIa, which explains why myosin II is associated with deafness in humans. In addition, Li et al. found that three other proteins that have been shown to cause Usher syndrome in humans have equivalents in flies and play a role in fly hearing. This will allow the Drosophila auditory organ to be further developed as a model system for future studies of deafness genes, and should provide insights into how specific genes are required for proper hearing in mammals.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesResearch integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.997
Threshold uncertainty score0.977

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0030.002
Insufficient payload (model declined to judge)0.2920.121

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.043
GPT teacher head0.312
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes1
Has abstractyes

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