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Record W3016420530 · doi:10.1101/2020.04.17.047217

Discovery of <i>Plasmodium falciparum</i> SR12 as a GOLD-Domain seven transmembrane protein regulating GPCR trafficking in mammalian cells

2020· preprint· en· W3016420530 on OpenAlexafffund
Pedro Henrique Scarpelli Pereira, Camila L. Kiyan, Miriam S. Moraes, Michel Bouvier, Célia R. S. Garcia

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2020
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicReceptor Mechanisms and Signaling
Canadian institutionsUniversité de MontréalInstitute for Research in Immunology and Cancer
FundersAlliance de recherche numérique du CanadaFundação de Amparo à Pesquisa do Estado de São Paulo
KeywordsThrombinG protein-coupled receptorReceptorHEK 293 cellsCell biologyThrombin receptorBiologyPlasmodium falciparumMuscarinic acetylcholine receptorUrokinase receptorSignal transductionChemistryBiochemistryPlateletMalariaImmunology

Abstract

fetched live from OpenAlex

Abstract Considered a significant public health issue, the growing resistance to conventional antimalarials necessitates the identification of new targets for drug development. Given that G protein-coupled receptors (GPCRs) are readily druggable targets, we explored the cellular role and potential structure of a GPCR-like protein identified in the P. falciparum genome, serpentine receptor 12 (SR12). Alphafold structure analysis, coupled with molecular dynamics simulations of SR12, revealed structural similarities to the Golgi dynamics domain (GOLD)-seven-transmembrane helix protein family (GOST proteins). This family of proteins, which includes TMEM87A and the orphan GPCRs GPR180, GPR107, and GPR108, is involved in subcellular trafficking. Consistent with such a trafficking role, SR12 is mainly present in the secretory pathway when expressed in mammalian cells. Co-expression of SR12 with GPCRs PAR1 and M3R led to increased plasma membrane targeting of these receptors. SR12 expression in HEK293 cells conferred Gαq-dependent calcium signaling in response to the protease activated receptor 1 (PAR1) agonist thrombin. This response was completely abrogated in cells genetically devoid of PARs (PAR KO cells), consistent with its functions as a chaperone-like protein, promoting receptor trafficking to the plasma membrane. Taken together, the data show that the Plasmodium falciparum SR12 promotes GPCR trafficking when expressed in mammalian cells. Although the physiological consequences of such activity remain to be determined, the finding revealed the presence of a GOST protein in the parasite genome.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.208
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2020
Admission routes2
Has abstractyes

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