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Record W3043343007 · doi:10.1101/2020.07.15.191114

Genetic variants for head size share genes and pathways with cancer

2020· preprint· en· W3043343007 on OpenAlexafffund
Maria J. Knol, Raymond A. Poot, Tavia E. Evans, Claudia L. Satizábal, Aniket Mishra, Sandra Van der Auwera, Marie‐Gabrielle Duperron, Xueqiu Jian, Dianne H.K. van Dam-Nolen, Sander Lamballais, Mikołaj A. Pawlak, Cora E. Lewis, Amaia Carrión-Castillo, Theo G.M. van Erp, Céline S. Reinbold, Jean Shin, Markus Scholz, Asta K. Håberg, Anders Kämpe, Gloria Hoi‐Yee Li, Reut Avinun, Joshua Atkins, Fang‐Chi Hsu, Alyssa R. Amod, Max Lam, Ami Tsuchida, Mariël W.A. Teunissen, Alexa Beiser, Frauke Beyer, Joshua C. Bis, Daniël Bos, R. Nick Bryan, Robin Bülow, Svenja Caspers, Gwénaëlle Catheline, Charlotte A. M. Cecil, Shareefa Dalvie, Jean‐François Dartigues, Charles DeCarli, Maria Enlund-Cerullo, Judith M. Ford, Barbara Franke, Barry I. Freedman, Nele Friedrich, Melissa J. Green, Simon Haworth, Catherine Helmer, Per Hoffmann, Georg Homuth, M. Kamran Ikram, Clifford R. Jack, Neda Jahanshad, Christiane Jockwitz, Shuo Li, Keane Lim, W. T. Longstreth, Fabìo Macciardi, Outi Mäkitie, Bernard Mazoyer, Sarah E. Medland, Susumu Miyamoto, Susanne Moebus, Thomas H. Mosley, Ryan L. Muetzel, Thomas W. Mühleisen, Manabu Nagata, Soichiro Nakahara, Zdenka Pausová, Adrian Preda, Yann Quidé, William R. Reay, Gennady V. Roshchupkin, Reinhold Schmidt, Pamela J. Schreiner, Kazuya Setoh, Chin Yang Shapland, Stephen Sidney, Beaté St Pourcain, Jason L. Stein, Yasuharu Tabara, Alexander Teumer, Anne Uhlmann, Aad van der Lugt, Meike W. Vernooij, David J. Werring, B. Gwen Windham, A. Veronica Witte, Katharina Wittfeld, Qiong Yang, Kazumichi Yoshida, Han G. Brunner, Quentin Le Grand, Kang Sim, Dan J. Stein, Donald W. Bowden, Murray J. Cairns, Ahmad R. Hariri, Ching‐Lung Cheung, Sture Andersson, Arno Villringer, Tomáš Paus, Sven Cichon, Vince D. Calhoun, Fabrice Crivello, Lenore J. Launer, Tonya White, Peter J. Koudstaal, Henry Houlden, Myriam Fornage, Fumihiko Matsuda, Hans J. Grabe, M. Arfan Ikram, Stéphanie Debette, Paul M. Thompson, Sudha Seshadri, Hieab H.H. Adams

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2020
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEpigenetics and DNA Methylation
Canadian institutionsHolland Bloorview Kids Rehabilitation HospitalSickKids FoundationHospital for Sick ChildrenUniversity of Toronto
FundersNational Human Genome Research InstituteNational Heart, Lung, and Blood InstitutePratt FoundationNational Institute on AgingMedical Research CouncilCanadian Institutes of Health ResearchNational Health and Medical Research CouncilKaiser Foundation Research InstituteMacquarie Group FoundationBundesministerium für Wissenschaft, Forschung und WirtschaftErasmus Medisch CentrumEuropean CommissionUniversity of Alabama at BirminghamAustralian Schizophrenia Research BankBundesministerium für Bildung und ForschungNederlandse Organisatie voor Wetenschappelijk OnderzoekAgence Nationale de la RechercheUniversity of AlabamaRamsay Health CareZonMwNorthwestern UniversitySylvia and Charles Viertel Charitable FoundationUniversity of MinnesotaNational Institutes of HealthU.S. Department of Health and Human Services
KeywordsBiologyGeneWnt signaling pathwayGeneticsBrain sizePTENHuman genomeHuman brainGenomeSignal transductionNeurosciencePI3K/AKT/mTOR pathwayMedicine

Abstract

fetched live from OpenAlex

Abstract The size of the human head is determined by growth in the first years of life, while the rest of the body typically grows until early adulthood 1 . Such complex developmental processes are regulated by various genes and growth pathways 2 . Rare genetic syndromes have revealed genes that affect head size 3 , but the genetic drivers of variation in head size within the general population remain largely unknown. To elucidate biological pathways underlying the growth of the human head, we performed the largest genome-wide association study on human head size to date (N = 79,107). We identified 67 genetic loci, 50 of which are novel, and found that these loci are preferentially associated with head size and mostly independent from height. In subsequent neuroimaging analyses, the majority of genetic variants demonstrated widespread effects on the brain, whereas the effects of 17 variants could be localized to one or two specific brain regions. Through hypothesis-free approaches, we find a strong overlap of head size variants with both cancer pathways and cancer genes. Gene set analyses showed enrichment for different types of cancer and the p53, Wnt and ErbB signalling pathway. Genes overlapping or close to lead variants – such as TP53 , PTEN and APC – were enriched for genes involved in macrocephaly syndromes (up to 37-fold) and high-fidelity cancer genes (up to 9-fold), whereas this enrichment was not seen for human height variants. This indicates that genes regulating early brain and cranial growth are associated with a propensity to neoplasia later in life, irrespective of height. Our results warrant further investigations of the link between head size and cancer, as well as its clinical implications in the general population.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.002
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0050.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.242
Teacher spread0.220 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2020
Admission routes2
Has abstractyes

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