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Record W3111421261 · doi:10.1038/s10038-020-00895-6

Variation in the SERPINA6/SERPINA1 locus alters morning plasma cortisol, hepatic corticosteroid binding globulin expression, gene expression in peripheral tissues, and risk of cardiovascular disease

2021· article· en· W3111421261 on OpenAlexafffund
Andrew Crawford, Sean Bankier, Elisabeth Altmaier, Catriona L. K. Barnes, David W. Clark, Raili Ermel, Nele Friedrich, Pim van der Harst, Peter K. Joshi, Ville Karhunen, Jari Lahti, Anubha Mahajan, Massimo Mangino, Maria Nethander, Alexander Neumann, Maik Pietzner, Katyayani Sukhavasi, Carol A. Wang, Stephan J. L. Bakker, Johan Björkegren, Harry Campbell, Johan G. Eriksson, Christian Gieger, Caroline Hayward, Marjo‐Riitta Järvelin, Stela McLachlan, Andrew P. Morris, Claes Ohlsson, Craig E. Pennell, Jackie F. Price, Igor Rudan, Arno Ruusalepp, Tim D. Spector, Henning Tiemeier, Henry Völzke, James F. Wilson, Tom Michoel, Nicholas J. Timpson, George Davey Smith, Brian R. Walker, Dan Mellström

Bibliographic record

VenueJournal of Human Genetics · 2021
Typearticle
Languageen
FieldMedicine
TopicHormonal Regulation and Hypertension
Canadian institutionsJewish General HospitalCentre for Global Health Research
FundersNational Health and Medical Research CouncilMedical Research CouncilCanadian Institutes of Health ResearchTerveyden ja hyvinvoinnin laitosNovo Nordisk FondenOulun YliopistoAkademiska SjukhusetGovernment of Western AustraliaHjärt-LungfondenMurdoch UniversitySocialdepartementetNational Institutes of HealthUniversity of Notre Dame AustraliaWomen and Infants Research FoundationZonMwRaine Medical Research FoundationNational Institute for Health and Care ResearchVetenskapsrådetAustralian GovernmentKing's College LondonNierstichtingUniversity of Notre DameBritish Heart FoundationScottish GovernmentCurtin University of TechnologyEuropean CommissionUppsala UniversitetErasmus Universiteit RotterdamEdith Cowan UniversityIcahn School of Medicine at Mount SinaiNederlandse Organisatie voor Wetenschappelijk OnderzoekBiotechnology and Biological Sciences Research CouncilWellcome TrustWellcome
KeywordsExpression quantitative trait lociBiologyInternal medicineEndocrinologyGenome-wide association studyQuantitative trait locusSingle-nucleotide polymorphismLocus (genetics)Vitamin D-binding proteinGeneticsGenotypeMedicineGeneVitamin D and neurology

Abstract

fetched live from OpenAlex

The stress hormone cortisol modulates fuel metabolism, cardiovascular homoeostasis, mood, inflammation and cognition. The CORtisol NETwork (CORNET) consortium previously identified a single locus associated with morning plasma cortisol. Identifying additional genetic variants that explain more of the variance in cortisol could provide new insights into cortisol biology and provide statistical power to test the causative role of cortisol in common diseases. The CORNET consortium extended its genome-wide association meta-analysis for morning plasma cortisol from 12,597 to 25,314 subjects and from ~2.2 M to ~7 M SNPs, in 17 population-based cohorts of European ancestries. We confirmed the genetic association with SERPINA6/SERPINA1. This locus contains genes encoding corticosteroid binding globulin (CBG) and α1-antitrypsin. Expression quantitative trait loci (eQTL) analyses undertaken in the STARNET cohort of 600 individuals showed that specific genetic variants within the SERPINA6/SERPINA1 locus influence expression of SERPINA6 rather than SERPINA1 in the liver. Moreover, trans-eQTL analysis demonstrated effects on adipose tissue gene expression, suggesting that variations in CBG levels have an effect on delivery of cortisol to peripheral tissues. Two-sample Mendelian randomisation analyses provided evidence that each genetically-determined standard deviation (SD) increase in morning plasma cortisol was associated with increased odds of chronic ischaemic heart disease (0.32, 95% CI 0.06-0.59) and myocardial infarction (0.21, 95% CI 0.00-0.43) in UK Biobank and similarly in CARDIoGRAMplusC4D. These findings reveal a causative pathway for CBG in determining cortisol action in peripheral tissues and thereby contributing to the aetiology of cardiovascular disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.262
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations77
Published2021
Admission routes2
Has abstractyes

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