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Record W3122173354 · doi:10.1093/cid/ciab067

Transcontinental Dissemination of the L2b/D-Da Recombinant <i>Chlamydia trachomatis</i> Lymphogranuloma venereum (LGV) Strain: Need of Broad Multi-Country Molecular Surveillance

2021· article· en· W3122173354 on OpenAlexaff
Vítor Borges, Joana Isidro, Cristina Belo Correia, Dora Cordeiro, Luı́s Vieira, Zohra Lodhia, Cândida Fernandes, Ana Maria Rodrigues, Jacinta Azevedo, João M. P. Alves, João Rôxo, Miguel Rocha, Rita Côrte‐Real, Cristina Toscano, Maria Ana Pessanha, Israel Nissan, Shlomo Pilo, Efrat Rorman, Zeev Dveyrin, Yossi Paitan, Haim Paran, Gal Wagner-Kolasko, Jennifer Beirnes, Suzanne Gibbons, Alberto Severini, Maria José Borrego, João Paulo Gomes

Bibliographic record

VenueClinical Infectious Diseases · 2021
Typearticle
Languageen
FieldImmunology and Microbiology
TopicReproductive tract infections research
Canadian institutionsUniversity of ManitobaPublic Health Agency of Canada
FundersPrograma Operacional Temático Factores de Competitividade
KeywordsLymphogranuloma venereumChlamydia trachomatisVirologyRecombinant DNAMen who have sex with menChlamydiaceaeMicrobiologyChlamydiaGenotypeStrain (injury)BiologyMedicineGeneGeneticsHuman immunodeficiency virus (HIV)SyphilisInternal medicine

Abstract

fetched live from OpenAlex

Previously, we identified a Chlamydia trachomatis lymphogranuloma venereum (LGV) recombinant strain possessing a non-LGV ompA genotype. Here, culture-independent genome sequencing confirms its circulation in Europe, Middle East, and North America, and unveils emergence of antibiotic resistance. Broad surveillance is needed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.004
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.205
Threshold uncertainty score0.772

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.004
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.334
Teacher spread0.316 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations24
Published2021
Admission routes1
Has abstractyes

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