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Record W3126515736 · doi:10.1038/s41467-021-21204-5

PRMT5 inhibition disrupts splicing and stemness in glioblastoma

2021· article· en· W3126515736 on OpenAlexafffund
Patty Sachamitr, Jolene Caifeng Ho, Felipe E. Ciamponi, Wail Ba-Alawi, Fiona J. Coutinho, Paul Guilhamon, Michelle Kushida, Florence M.G. Cavalli, Lilian Lee, Naghmeh Rastegar, Victoria Vu, María Sánchez‐Osuna, Jasmin Coulombe‐Huntington, Evgeny Kanshin, Heather Whetstone, Mathieu Durand, P Thibault, Kirsten Hart, Maria Mangos, Joseph Veyhl, Wenjun Chen, Nhat Tran, Bang-Chi Duong, Ahmed Aman, Xinghui Che, Xiaoyang Lan, Owen Whitley, Olga Zaslaver, Dalia Baršytė-Lovejoy, Laura M. Richards, Ian J. Restall, Amy A. Caudy, Hannes Röst, Zahid Bonday, Mark Bernstein, Sunit Das, Michael D. Cusimano, Julian Spears, Gary D. Bader, Trevor J. Pugh, Mike Tyers, Mathieu Lupien, Benjamin Haibe‐Kains, H. Artee Luchman, Samuel Weiss, Katlin B. Massirer, Panagiotis Prinos, C.H. Arrowsmith, Peter B. Dirks

Bibliographic record

VenueNature Communications · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related gene regulation
Canadian institutionsVector InstituteSt. Michael's HospitalToronto Western HospitalHotchkiss Brain InstitutePrincess Margaret Cancer CentreUniversity of CalgaryOntario Institute for Cancer ResearchUniversity of TorontoUniversité de SherbrookeHospital for Sick ChildrenUniversité de MontréalUniversity Health NetworkInstitute for Research in Immunology and CancerSickKids FoundationStructural Genomics Consortium
FundersMitacsSick Kids FoundationStand Up To CancerNovartis PharmaOntario Genomics InstituteGovernment of CanadaOntario Institute for Cancer ResearchUniversité de SherbrookeEntertainment Industry FoundationEuropean Federation of Pharmaceutical Industries and AssociationsMerck KGaACanada's Michael Smith Genome Sciences CentreOntario Ministry of Research, Innovation and ScienceOntario GenomicsFundação de Amparo à Pesquisa do Estado de São PauloGenome CanadaHospital for Sick ChildrenPfizerGovernment of OntarioAmerican Association for Cancer Research
KeywordsProtein arginine methyltransferase 5Cancer researchTranscriptomeStem cellBiologyAlternative splicingRNA splicingGliomaCancer stem cellGeneMethyltransferaseBioinformaticsCell biologyExonGeneticsGene expressionMethylation

Abstract

fetched live from OpenAlex

Glioblastoma (GBM) is a deadly cancer in which cancer stem cells (CSCs) sustain tumor growth and contribute to therapeutic resistance. Protein arginine methyltransferase 5 (PRMT5) has recently emerged as a promising target in GBM. Using two orthogonal-acting inhibitors of PRMT5 (GSK591 or LLY-283), we show that pharmacological inhibition of PRMT5 suppresses the growth of a cohort of 46 patient-derived GBM stem cell cultures, with the proneural subtype showing greater sensitivity. We show that PRMT5 inhibition causes widespread disruption of splicing across the transcriptome, particularly affecting cell cycle gene products. We identify a GBM splicing signature that correlates with the degree of response to PRMT5 inhibition. Importantly, we demonstrate that LLY-283 is brain-penetrant and significantly prolongs the survival of mice with orthotopic patient-derived xenografts. Collectively, our findings provide a rationale for the clinical development of brain penetrant PRMT5 inhibitors as treatment for GBM.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.282
Teacher spread0.274 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations217
Published2021
Admission routes2
Has abstractyes

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Same venueNature CommunicationsSame topicCancer-related gene regulationFrench-language works237,207