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Record W3127163105 · doi:10.1101/2021.02.09.429966

Human monoclonal antibodies against <i>Staphylococcus aureus</i> surface antigens recognize <i>in vitro</i> biofilm and <i>in vivo</i> implant infections

2021· preprint· en· W3127163105 on OpenAlexaff
Lisanne de Vor, Bruce van Dijk, Kok P. M. van Kessel, J.S. Kavanaugh, Carla J. C. de Haas, Piet C. Aerts, Marco C. Viveen, Edwin Boel, Ad C. Fluit, Jakub Kwieciński, Gerard C. Krijger, Ruud M. Ramakers, Freek J. Beekman, Ekaterina Dadachova, Marnix G. E. H. Lam, H. Charles Vogely, Bart C. H. van der Wal, Jos A. G. van Strijp, Alexander R. Horswill, Harrie Weinans, Suzan H. M. Rooijakkers

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2021
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacterial biofilms and quorum sensing
Canadian institutionsUniversity of Saskatchewan
FundersAmsterdam University Medical CentersUniversität KonstanzUniversitair Medisch Centrum UtrechtWageningen University and ResearchNederlandse Organisatie voor Wetenschappelijk OnderzoekNational Institutes of HealthUniversiteit LeidenHealth~Holland
KeywordsBiofilmStaphylococcus aureusTeichoic acidMicrobiologyMonoclonal antibodyIn vivoAntibioticsIn vitroAntibodyBiologyStaphylococcal infectionsAntigenBacteriaChemistryImmunology

Abstract

fetched live from OpenAlex

Abstract Implant-associated Staphylococcus aureus infections are difficult to treat because of biofilm formation. Bacteria in a biofilm are often insensitive to antibiotics and host immunity. Monoclonal antibodies (mAbs) could provide an alternative approach to improve the diagnosis and/or treatment of biofilm-related infections. Here we show that mAbs targeting common surface components of S. aureus can recognize clinically relevant biofilm types. We identify two groups of antibodies: one group that uniquely binds S. aureus in biofilm state and one that recognizes S. aureus in both biofilm and planktonic state. In a mouse model, we show that mAb 4497 (recognizing wall teichoic acid (WTA)) specifically localizes to biofilm-infected implants. In conclusion, we demonstrate the capacity of several human mAbs to detect S. aureus biofilms in vitro and in vivo . This is an important first step to develop mAbs for imaging or treating S. aureus biofilms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.219
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2021
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicBacterial biofilms and quorum sensing→French-language works237,207→