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Record W3135185765 · doi:10.2196/21547

Implementation of the COVID-19 Vulnerability Index Across an International Network of Health Care Data Sets: Collaborative External Validation Study

2021· article· en· W3135185765 on OpenAlexvenueno aff
Jenna Reps, Chungsoo Kim, Ross D. Williams, Aniek F. Markus, Cynthia Yang, Talita Duarte‐Salles, Thomas Falconer, Jitendra Jonnagaddala, Andrew E. Williams, Sergio Fernández‐Bertolín, Scott L. DuVall, Kristin Kostka, Gowtham Rao, Azza Shoaibi, Anna Ostropolets, Henry M. Spotnitz, Lin Zhang, Paula Casajust, Ewout W. Steyerberg, Fredrik Nyberg, Benjamin Skov Kaas‐Hansen, Young Hwa Choi, Daniel R. Morales, Siaw‐Teng Liaw, Maria Tereza Fernandes Abrahão, Carlos Areia, Michael E. Matheny, Kristine E. Lynch, María Aragón, Rae Woong Park, George Hripcsak, Christian Reich, Marc A. Suchard, Seng Chan You, Patrick Ryan, Daniel Prieto‐Alhambra, Peter R. Rijnbeek

Bibliographic record

VenueJMIR Medical Informatics · 2021
Typearticle
Languageen
FieldMedicine
TopicCOVID-19 Clinical Research Studies
Canadian institutionsnot available
FundersJanssen Research and DevelopmentNational Institutes of HealthInnovative Medicines InitiativeNovo Nordisk FondenMinistry of Trade, Industry and EnergyNovo NordiskKorea Health Industry Development InstituteNational Institute for Health and Care ResearchGeneralitat de CatalunyaUniversity of OxfordDirecció General de Recerca, Generalitat de CatalunyaEuropean Federation of Pharmaceutical Industries and AssociationsU.S. National Library of MedicineU.S. Department of Veterans AffairsUniversity of New South WalesWellcome TrustInnovationsfondenEuropean CommissionNational Institute of Diabetes and Digestive and Kidney DiseasesBill and Melinda Gates Foundation
KeywordsCoronavirus disease 2019 (COVID-19)2019-20 coronavirus outbreakIndex (typography)Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)Vulnerability (computing)Computer scienceMedicineMedical emergencyData scienceComputer securityVirologyOutbreakWorld Wide Web

Abstract

fetched live from OpenAlex

BACKGROUND: SARS-CoV-2 is straining health care systems globally. The burden on hospitals during the pandemic could be reduced by implementing prediction models that can discriminate patients who require hospitalization from those who do not. The COVID-19 vulnerability (C-19) index, a model that predicts which patients will be admitted to hospital for treatment of pneumonia or pneumonia proxies, has been developed and proposed as a valuable tool for decision-making during the pandemic. However, the model is at high risk of bias according to the "prediction model risk of bias assessment" criteria, and it has not been externally validated. OBJECTIVE: The aim of this study was to externally validate the C-19 index across a range of health care settings to determine how well it broadly predicts hospitalization due to pneumonia in COVID-19 cases. METHODS: We followed the Observational Health Data Sciences and Informatics (OHDSI) framework for external validation to assess the reliability of the C-19 index. We evaluated the model on two different target populations, 41,381 patients who presented with SARS-CoV-2 at an outpatient or emergency department visit and 9,429,285 patients who presented with influenza or related symptoms during an outpatient or emergency department visit, to predict their risk of hospitalization with pneumonia during the following 0-30 days. In total, we validated the model across a network of 14 databases spanning the United States, Europe, Australia, and Asia. RESULTS: The internal validation performance of the C-19 index had a C statistic of 0.73, and the calibration was not reported by the authors. When we externally validated it by transporting it to SARS-CoV-2 data, the model obtained C statistics of 0.36, 0.53 (0.473-0.584) and 0.56 (0.488-0.636) on Spanish, US, and South Korean data sets, respectively. The calibration was poor, with the model underestimating risk. When validated on 12 data sets containing influenza patients across the OHDSI network, the C statistics ranged between 0.40 and 0.68. CONCLUSIONS: Our results show that the discriminative performance of the C-19 index model is low for influenza cohorts and even worse among patients with COVID-19 in the United States, Spain, and South Korea. These results suggest that C-19 should not be used to aid decision-making during the COVID-19 pandemic. Our findings highlight the importance of performing external validation across a range of settings, especially when a prediction model is being extrapolated to a different population. In the field of prediction, extensive validation is required to create appropriate trust in a model.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.019
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.151
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0040.019
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.128
GPT teacher head0.582
Teacher spread0.454 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations26
Published2021
Admission routes1
Has abstractyes

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