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Record W3138553809 · doi:10.1101/2021.03.25.437029

INPP4B drives lysosome biogenesis to restrict leukemic stem cell differentiation and promote leukemogenesis

2021· preprint· en· W3138553809 on OpenAlexafffund
John F. Woolley, Keyue Chen, Golam T. Saffi, Gizem Esra Genç, Daniel K.C. Lee, Irakli Dzneladze, Ruijuan He, Jonathan Tak-Sum Chow, Martino Gabra, Meong Hi Son, Ché M.P. Melo, Candaice A. Newell, Aobo He, Erwin M. Schoof, Stephanie Z. Xie, Emily M. Mangialardi, Max Kotlyar, Ayesha Rashid, Miki S. Gams, Jean Vacher, Cynthia J. Guidos, Igor Jurišica, John E. Dick, Roberto J. Botelho, Mark D. Minden, Leonardo Salmena

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2021
Typepreprint
Languageen
FieldMedicine
TopicAcute Myeloid Leukemia Research
Canadian institutionsUniversité de MontréalMontreal Clinical Research InstituteHospital for Sick ChildrenPrincess Margaret Cancer CentreUniversity Health NetworkToronto Metropolitan UniversityUniversity of TorontoOntario Institute for Cancer ResearchDiscovery Centre
FundersNatural Sciences and Engineering Research Council of CanadaGovernment of OntarioLeukemia and Lymphoma Society of CanadaUniversity of TorontoTemerty Faculty of Medicine, University of TorontoOntario Institute for Cancer ResearchCanadian Institutes of Health ResearchLeukemia and Lymphoma Society
KeywordsBiologyCancer researchStem cellLysosomeBiogenesisMyeloid leukemiaHaematopoiesisHematopoietic stem cellLeukemiaMechanism (biology)Cell biologyGeneImmunologyGeneticsBiochemistry

Abstract

fetched live from OpenAlex

Abstract Signaling pathways that control vital features of leukemic stem cells including multipotency, self-renewal, clonal expansion and quiescence remain unclear. Emerging studies illustrate critical roles for lysosomes in hematopoietic and leukemic stem cell fate. By investigating consequences of INPP4B alterations in AML, we have discovered its role in driving leukemic ‘stemness’. We observed that INPP4B is highly expressed leukemic stem cell populations and Inpp4b -deficeint leukemias demonstrate increased disease latency, reduced leukemia initiating potential which is associated with a differentiated leukemic phenotype. Molecular analyses show that Inpp4b -deficient leukemias have compromised lysosomal gene expression, lysosomal content, and lysosomal activity. Our discovery of a novel pathway linking INPP4B, lysosomal biogenesis and leukemic stemness, provides a mechanism to explain the association of high INPP4B expression with poor AML prognosis, and highlights novel patient stratification strategies and LSC-specific leukemic therapies. Key Points Our findings highlight a novel pathway linking INPP4B, lysosomal function and leukemic stemness that explains the prognostic role of INPP4B in AML. Our data reveal the utility of INPP4B as a biomarker of aggressive AML and provide a rationale to explore INPP4B and its associated function in lysosome biology as novel strategies to target LSC and AML

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.021

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0060.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.237
Teacher spread0.220 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2021
Admission routes2
Has abstractyes

Explore more

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