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MicroRNA miR‐378‐3p is an Essential Regulator of Autophagy and Proliferation in Endothelial Cells

2021· article· en· W3167351821 on OpenAlexaff
Shuhan Bu, Hien C. Nguyen, David Michels, Justin Williamson, Alexander Perron, Lynn Wang, Shweta Singh, Jefferson C. Frisbee, Krishna K. Singh

Bibliographic record

VenueThe FASEB Journal · 2021
Typearticle
Languageen
FieldMedicine
TopicAutophagy in Disease and Therapy
Canadian institutionsWestern University
Fundersnot available
KeywordsAutophagyCell biologyGene silencingmicroRNADownregulation and upregulationLysosomePI3K/AKT/mTOR pathwayBiologyRegulatorChemistrySignal transductionBiochemistryApoptosisGene

Abstract

fetched live from OpenAlex

Background Macroautophagy is a highly conserved cellular process in which cytoplasmic materials are internalized into an autophagosome that later fuses with a lysosome for their degradation and recycling. MicroRNAs (miRNAs) are integral regulators in a variety of cellular processes and are known to regulate autophagy, and miRNA and autophagy both play roles in the regulation of endothelial function. Accordingly, we hypothesize that miRNA miR‐378‐3p is an essential regulator of endothelial autophagy and endothelial function. Methods and Results To test our hypothesis, we cultured human umbilical vein endothelial cells (HUVEC) and confirmed the basal expression of miR‐378‐3p. To determine the effect of autophagy on miR‐378a‐3p, autophagy was genetically (via silencing autophagy‐related gene ATG7) and pharmacologically (via chloroquine treatment) inhibited in HUVECs, which resulted in the upregulation of miRNA miR‐378a‐3p. We also measured miR‐378a‐3p expression following autophagy activation (via starvation) and observed a significant down‐regulation of miR‐378‐3p expression. Next, we over‐expressed miR‐378a‐3p (by mimic) in HUVECs and measured autophagy and endothelial function in the form of endothelial cell proliferation and migration. MiR‐378a‐3p over‐expression was associated with impaired autophagy indicated by reduced LC3‐II/LC‐3‐I ratio, reduced proliferation and migration in HUVECs. At the molecular level, miR‐378a‐3p over‐expression was associated with increased mTOR (mammalian target of rapamycin; an autophagy regulator) expression at the transcript and the protein levels in HUVECs. Conclusion Our preliminary findings indicate an essential role of miR‐378a‐3p in the regulation of endothelial autophagy and endothelial function. We demonstrate an inverse relationship between miR‐378a‐3p expression and endothelial autophagy and function, warranting future investigations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.267
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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