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Record W3193593859 · doi:10.21203/rs.3.rs-659023/v1

Autophagy promotes cell survival by maintaining NAD(H) levels

2021· preprint· en· W3193593859 on OpenAlexaff
Lucia Sedlackova, Tetsushi Kataura, Elena Seranova, Congxin Sun, Elsje G. Otten, Malkiel A. Cohen, Miruna Chipara, Adina M. Palhegyi, David Shapira, Filippo Scialò, Rhoda Stefanatos, Kei‐ichi Ishikawa, Niall S. Kenneth, Tong Zhang, Prashanta Kumar Panda, Malgorzata Zatyka, Luiz Silva, Jorge Torresi, Kevin Kauffman, Shupei Zhang, Dorothea Maetzel, Thiago Varga, Carl Ward, David Cartwright, Gareth G. Lavery, Gaurav Sahay, Yosef Buganim, Daniel G. Anderson, Animesh Acharjee, Charles C. Bascom, Ryan Tasseff, Robert J. Isfort, John E. Oblong, Joerg Gsponer, Satomi Miwa, Michael Lazarou, Manolis Papamichos‐Chronakis, Haoyi Wang, Masaya Imoto, Shinji Saiki, Oliver D.K. Maddocks, Alberto Sanz, Tatiana R. Rosenstock, Rudolf Jaenisch, Viktor I. Korolchuk, Sovan Sarkar

Bibliographic record

VenueResearch Square · 2021
Typepreprint
Languageen
FieldMedicine
TopicAutophagy in Disease and Therapy
Canadian institutionsUniversity of British Columbia
FundersBiotechnology and Biological Sciences Research CouncilMedical Research CouncilLifeArcSurgical Reconstruction and Microbiology Research CentreLEO FondetNational Institute for Health and Care ResearchNational Institutes of HealthJapan Society for the Promotion of ScienceNational Health and Medical Research CouncilCancer Research UKFundação de Amparo à Pesquisa do Estado de São PauloWellcome TrustEmerald FoundationUK-India Education and Research Initiative
KeywordsAutophagyNAD+ kinaseCell biologyCell survivalChemistryCellBiologyBiochemistryApoptosisEnzyme

Abstract

fetched live from OpenAlex

Abstract Autophagy is an essential catabolic process that promotes the clearance of surplus or damaged intracellular components1. As a recycling process, autophagy is also important for the maintenance of cellular metabolites to aid metabolic homeostasis2. Loss of autophagy in animal models or malfunction of this process in a number of age-related human pathologies, including neurodegenerative and lysosomal storage diseases, contributes to tissue degeneration3-9. However, it remains unclear which of the many cellular functions of autophagy primarily underlies its role in cell survival. Here we have identified an evolutionarily conserved role of autophagy from yeast to humans in the preservation of nicotinamide adenine dinucleotide (NAD+/NADH) levels, which are critical for cellular survival. In respiring cells, loss of autophagy caused hyperactivation of PARP and Sirtuin families of NADases. Uncontrolled depletion of NAD(H) pool by these enzymes resulted in mitochondrial membrane depolarisation and cell death. Supplementation with NAD(H) precursors improved cell viability in autophagy-deficient models including human pluripotent stem cell-derived neurons with autophagy deficiency or patient-derived neurons with autophagy dysfunction. Our study provides a mechanistic link between autophagy and NAD(H) metabolism, and suggests that boosting NAD(H) levels may have therapeutic benefits in human diseases associated with autophagy dysfunction.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.023

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0070.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.090
GPT teacher head0.420
Teacher spread0.330 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

Explore more

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